How To Install seqan2-apps on Fedora 36

In this tutorial we learn how to install seqan2-apps in Fedora 36. seqan2-apps is SeqAn (2.x.x) applications

Introduction

In this tutorial we learn how to install seqan2-apps on Fedora 36.

What is `seqan2-apps`

All SeqAn applications.

We can use yum or dnf to install seqan2-apps on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install seqan2-apps.

Install seqan2-apps on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install seqan2-apps using dnf by running the following command:

sudo dnf -y install seqan2-apps

Install seqan2-apps on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install seqan2-apps using yum by running the following command:

sudo yum -y install seqan2-apps

How To Uninstall seqan2-apps on Fedora 36

To uninstall only the seqan2-apps package we can use the following command:

sudo dnf remove seqan2-apps

seqan2-apps Package Contents on Fedora 36

/usr/bin/alf
/usr/bin/bam2roi
/usr/bin/bed_sort.sh
/usr/bin/bisar
/usr/bin/casbar
/usr/bin/compute_gain
/usr/bin/dfi
/usr/bin/fiona
/usr/bin/four2three
/usr/bin/fx_bam_coverage
/usr/bin/gff_sort.sh
/usr/bin/gustaf
/usr/bin/gustaf_mate_joining
/usr/bin/insegt
/usr/bin/mason_frag_sequencing
/usr/bin/mason_genome
/usr/bin/mason_materializer
/usr/bin/mason_methylation
/usr/bin/mason_simulator
/usr/bin/mason_splicing
/usr/bin/mason_variator
/usr/bin/micro_razers
/usr/bin/pair_align
/usr/bin/param_chooser
/usr/bin/plot.awk
/usr/bin/ps2pswLinks.gawk
/usr/bin/rabema_build_gold_standard
/usr/bin/rabema_evaluate
/usr/bin/rabema_prepare_sam
/usr/bin/razers
/usr/bin/razers3
/usr/bin/rep_sep
/usr/bin/roi_feature_projection
/usr/bin/roi_plot_9.sh
/usr/bin/roi_plot_thumbnails
/usr/bin/roi_sort.sh
/usr/bin/s4_join
/usr/bin/s4_search
/usr/bin/sak
/usr/bin/sam2matrix
/usr/bin/samcat
/usr/bin/seqan_tcoffee
/usr/bin/seqcons2
/usr/bin/sgip
/usr/bin/snp_store
/usr/bin/splazers
/usr/bin/stellar
/usr/bin/tree_recon
/usr/bin/yara_indexer
/usr/bin/yara_mapper
/usr/lib/.build-id
/usr/lib/.build-id/03
/usr/lib/.build-id/03/a1b82dde6bf6b9ef5a0907a445b253f9c6e663
/usr/lib/.build-id/0f
/usr/lib/.build-id/0f/b27ec4a8844f72be110ea129e9ebb1f8896aaf
/usr/lib/.build-id/17
/usr/lib/.build-id/17/32b18862ba31c33e1a5869661671d6d5179042
/usr/lib/.build-id/17/c9a6657ce760f0f670ed17d6fa425288e2f6dc
/usr/lib/.build-id/1c
/usr/lib/.build-id/1c/98fe115a34915440884c38f0af2a2081f05e0b
/usr/lib/.build-id/21
/usr/lib/.build-id/21/dec2fb4c41b6258219cef6170a6ec783b9f664
/usr/lib/.build-id/28
/usr/lib/.build-id/28/6e36a2b6bc373c9698518b79189a127e4de8f4
/usr/lib/.build-id/2f
/usr/lib/.build-id/2f/8cc388a443add15451e0e8edd6cc31b5a0d95c
/usr/lib/.build-id/32
/usr/lib/.build-id/32/01a44dcc24a7cc3e9c97737dd58aa25cb87733
/usr/lib/.build-id/34
/usr/lib/.build-id/34/27688110b81ba140152ea0ab6809fd8221f1a7
/usr/lib/.build-id/36
/usr/lib/.build-id/36/8eda35ce0909258140f943603bb7cf0cf66c67
/usr/lib/.build-id/38
/usr/lib/.build-id/38/2cbae7e910bbfff23f066043c7992e212a5eb0
/usr/lib/.build-id/39
/usr/lib/.build-id/39/29fb8a30451d8b683f2191b78f8dcb326973a0
/usr/lib/.build-id/40
/usr/lib/.build-id/40/fa329b8d0ada89c2b07d178f77f46207e80739
/usr/lib/.build-id/5b
/usr/lib/.build-id/5b/91b57bd5c3ab426e84555f86a24929219347c0
/usr/lib/.build-id/6a
/usr/lib/.build-id/6a/4047654483cdf0e1792cd034a1065dca27ae6f
/usr/lib/.build-id/7d
/usr/lib/.build-id/7d/fc72c99ba672a80b7325eeb960855d0b836d76
/usr/lib/.build-id/7f
/usr/lib/.build-id/7f/362100e6512d713ee9fff827543755ec4fb0dc
/usr/lib/.build-id/80
/usr/lib/.build-id/80/da055219794fd834dfe41f5ed1f5cc5d451aa4
/usr/lib/.build-id/91
/usr/lib/.build-id/91/67b68c2e76a906ad482e36e730e8c1b61fc970
/usr/lib/.build-id/98
/usr/lib/.build-id/98/83f075d9b4f4677c0df27e8e32aff2f3e21f5b
/usr/lib/.build-id/9b
/usr/lib/.build-id/9b/aa1530a3dd560e6cba43831deb060dfece69c4
/usr/lib/.build-id/a6
/usr/lib/.build-id/a6/c98cf6be9d0d49179396aacf6ad794a8971549
/usr/lib/.build-id/af
/usr/lib/.build-id/af/20ef0bffea7004b6a372020fba88ca70c43e9e
/usr/lib/.build-id/bb
/usr/lib/.build-id/bb/2c0c87e5c8fa377bf2e90ec175dc5bc36fb99b
/usr/lib/.build-id/be
/usr/lib/.build-id/be/800a036fca5b89cf4ae328417e6f089b0cf335
/usr/lib/.build-id/bf
/usr/lib/.build-id/bf/5583cb23eb3fe92b0979319f8d0e1f75b60dd2
/usr/lib/.build-id/c3
/usr/lib/.build-id/c3/a8226bb048e07e81ecc1655043eb01b1dd9435
/usr/lib/.build-id/ca
/usr/lib/.build-id/ca/cd4cddbaac95de6fef6ddb7d9f5427f55835b1
/usr/lib/.build-id/cc
/usr/lib/.build-id/cc/7df274fc3e3a9825aa279d9f07d683e9206df2
/usr/lib/.build-id/d7
/usr/lib/.build-id/d7/c1a6bfc828b015f5e005a7b1bb869ddfe4af58
/usr/lib/.build-id/dc
/usr/lib/.build-id/dc/42414504818a582e5a4c79d0d0c97344a2023f
/usr/lib/.build-id/de
/usr/lib/.build-id/de/6cee64a59e546e963fd06f9e7d67fc6b2ce6fc
/usr/lib/.build-id/df
/usr/lib/.build-id/df/a4390950f74f7ba03c36b478f944525e5fbb54
/usr/lib/.build-id/e4
/usr/lib/.build-id/e4/2153444b4b84e03cea2dadd6a5ad8cae202146
/usr/lib/.build-id/e4/5d3377ea5c13b65945f0c40b8b532223a2eb9a
/usr/lib/.build-id/e6
/usr/lib/.build-id/e6/c99e15c89d8cfb28d41919eb5862d565466ecc
/usr/lib/.build-id/e8
/usr/lib/.build-id/e8/5bc31e643d436274f2f07743f8eb97a4b46c72
/usr/lib/.build-id/eb
/usr/lib/.build-id/eb/72f5eb209387038d015c602bc160148dbcaf2f
/usr/lib/.build-id/ec
/usr/lib/.build-id/ec/e6fff53ba28e74659249e7c546532c899d5185
/usr/lib/.build-id/f0
/usr/lib/.build-id/f0/dbea6f8bce4d6c0d64eea1465d6caec2504fc0
/usr/lib/.build-id/f6
/usr/lib/.build-id/f6/0cfa5d807e29f3d9cef6be1a58d0862eda6ff2
/usr/lib/.build-id/f6/44d4a81dce5508dbac9ef133fea4f58d47055c
/usr/lib/.build-id/fe
/usr/lib/.build-id/fe/7a055fa97849b5d50165fe57442001c26be5fd
/usr/share/doc/seqan2-apps
/usr/share/doc/seqan2-apps/CHANGELOG.rst
/usr/share/doc/seqan2-apps/README.rst
/usr/share/licenses/seqan2-apps
/usr/share/licenses/seqan2-apps/LICENSE
/usr/share/licenses/seqan2-apps/alf-LICENSE
/usr/share/licenses/seqan2-apps/bs_tools-LICENSE
/usr/share/licenses/seqan2-apps/dfi-LICENSE
/usr/share/licenses/seqan2-apps/fiona-LICENSE
/usr/share/licenses/seqan2-apps/fx_tools-LICENSE
/usr/share/licenses/seqan2-apps/gustaf-LICENSE
/usr/share/licenses/seqan2-apps/insegt-LICENSE
/usr/share/licenses/seqan2-apps/mason2-LICENSE
/usr/share/licenses/seqan2-apps/micro_razers-LICENSE
/usr/share/licenses/seqan2-apps/ngs_roi-LICENSE
/usr/share/licenses/seqan2-apps/pair_align-LICENSE
/usr/share/licenses/seqan2-apps/param_chooser-LICENSE
/usr/share/licenses/seqan2-apps/rabema-COPYING
/usr/share/licenses/seqan2-apps/rabema-LICENSE
/usr/share/licenses/seqan2-apps/razers-LICENSE
/usr/share/licenses/seqan2-apps/razers3-LICENSE
/usr/share/licenses/seqan2-apps/rep_sep-LICENSE
/usr/share/licenses/seqan2-apps/sak-LICENSE
/usr/share/licenses/seqan2-apps/sam2matrix-LICENSE
/usr/share/licenses/seqan2-apps/samcat-LICENSE
/usr/share/licenses/seqan2-apps/searchjoin-LICENSE
/usr/share/licenses/seqan2-apps/seqan_tcoffee-LICENSE
/usr/share/licenses/seqan2-apps/seqcons2-LICENSE
/usr/share/licenses/seqan2-apps/sgip-LICENSE
/usr/share/licenses/seqan2-apps/snp_store-LICENSE
/usr/share/licenses/seqan2-apps/splazers-LICENSE
/usr/share/licenses/seqan2-apps/stellar-LICENSE
/usr/share/licenses/seqan2-apps/tree_recon-LICENSE
/usr/share/licenses/seqan2-apps/yara-LICENSE
/usr/share/man/man1/sak.1.gz
/usr/share/seqan2
/usr/share/seqan2/pdf_plot_helper
/usr/share/seqan2/pdf_plot_helper/plot.awk
/usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk

References

seqan2-apps website

Summary

In this tutorial we learn how to install seqan2-apps on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).