How To Install seqan-doc on Fedora 36
In this tutorial we learn how to install seqan-doc in Fedora 36. seqan-doc is SeqAn documentation
Introduction
In this tutorial we learn how to install seqan-doc on Fedora 36.
What is seqan-doc
Info files of SeqAn’s apps.
We can use yum or dnf to install seqan-doc on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install seqan-doc.
Install seqan-doc on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install seqan-doc using dnf by running the following command:
sudo dnf -y install seqan-doc
Install seqan-doc on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install seqan-doc using yum by running the following command:
sudo yum -y install seqan-doc
How To Uninstall seqan-doc on Fedora 36
To uninstall only the seqan-doc package we can use the following command:
sudo dnf remove seqan-doc
seqan-doc Package Contents on Fedora 36
/usr/share/doc/seqan-doc
/usr/share/doc/seqan-doc/seqandoc
/usr/share/doc/seqan-doc/seqandoc/alf
/usr/share/doc/seqan-doc/seqandoc/alf/LICENSE
/usr/share/doc/seqan-doc/seqandoc/alf/README
/usr/share/doc/seqan-doc/seqandoc/alf/example
/usr/share/doc/seqan-doc/seqandoc/alf/example/small.fasta
/usr/share/doc/seqan-doc/seqandoc/breakpoint_calculator
/usr/share/doc/seqan-doc/seqandoc/breakpoint_calculator/LICENSE
/usr/share/doc/seqan-doc/seqandoc/breakpoint_calculator/README
/usr/share/doc/seqan-doc/seqandoc/breakpoint_calculator/example
/usr/share/doc/seqan-doc/seqandoc/breakpoint_calculator/example/alignment.maf
/usr/share/doc/seqan-doc/seqandoc/bs_tools
/usr/share/doc/seqan-doc/seqandoc/bs_tools/LICENSE
/usr/share/doc/seqan-doc/seqandoc/bs_tools/README
/usr/share/doc/seqan-doc/seqandoc/dfi
/usr/share/doc/seqan-doc/seqandoc/dfi/LICENSE
/usr/share/doc/seqan-doc/seqandoc/dfi/README
/usr/share/doc/seqan-doc/seqandoc/dfi/example
/usr/share/doc/seqan-doc/seqandoc/dfi/example/fasta1.fa
/usr/share/doc/seqan-doc/seqandoc/dfi/example/fasta2.fa
/usr/share/doc/seqan-doc/seqandoc/fiona
/usr/share/doc/seqan-doc/seqandoc/fiona/LICENSE
/usr/share/doc/seqan-doc/seqandoc/fiona/README
/usr/share/doc/seqan-doc/seqandoc/fiona/example
/usr/share/doc/seqan-doc/seqandoc/fiona/example/reads.fa
/usr/share/doc/seqan-doc/seqandoc/fx_tools
/usr/share/doc/seqan-doc/seqandoc/fx_tools/LICENSE
/usr/share/doc/seqan-doc/seqandoc/fx_tools/README
/usr/share/doc/seqan-doc/seqandoc/gustaf
/usr/share/doc/seqan-doc/seqandoc/gustaf/LICENSE
/usr/share/doc/seqan-doc/seqandoc/gustaf/README
/usr/share/doc/seqan-doc/seqandoc/gustaf/example
/usr/share/doc/seqan-doc/seqandoc/gustaf/example/adeno.fa
/usr/share/doc/seqan-doc/seqandoc/gustaf/example/adeno_modified.fa
/usr/share/doc/seqan-doc/seqandoc/gustaf/example/adeno_modified_reads.fa
/usr/share/doc/seqan-doc/seqandoc/gustaf/example/stellar.gff
/usr/share/doc/seqan-doc/seqandoc/insegt
/usr/share/doc/seqan-doc/seqandoc/insegt/LICENSE
/usr/share/doc/seqan-doc/seqandoc/insegt/README
/usr/share/doc/seqan-doc/seqandoc/insegt/example
/usr/share/doc/seqan-doc/seqandoc/insegt/example/annoOutput.gff
/usr/share/doc/seqan-doc/seqandoc/insegt/example/annotations.gff
/usr/share/doc/seqan-doc/seqandoc/insegt/example/readOutput.gff
/usr/share/doc/seqan-doc/seqandoc/insegt/example/tupleOutput.gff
/usr/share/doc/seqan-doc/seqandoc/mason
/usr/share/doc/seqan-doc/seqandoc/mason/LICENSE
/usr/share/doc/seqan-doc/seqandoc/mason/README
/usr/share/doc/seqan-doc/seqandoc/mason/example
/usr/share/doc/seqan-doc/seqandoc/mason/example/SRR018294.1.1M.error_dist
/usr/share/doc/seqan-doc/seqandoc/mason/example/SRR018311.1.1M.error_dist
/usr/share/doc/seqan-doc/seqandoc/mason/example/SRR026674.1.1M.error_dist
/usr/share/doc/seqan-doc/seqandoc/mason/example/SRR049254.1.1M.error_dist
/usr/share/doc/seqan-doc/seqandoc/mason2
/usr/share/doc/seqan-doc/seqandoc/mason2/LICENSE
/usr/share/doc/seqan-doc/seqandoc/mason2/README
/usr/share/doc/seqan-doc/seqandoc/mason2/example
/usr/share/doc/seqan-doc/seqandoc/mason2/example/adeno_virus.fa
/usr/share/doc/seqan-doc/seqandoc/micro_razers
/usr/share/doc/seqan-doc/seqandoc/micro_razers/LICENSE
/usr/share/doc/seqan-doc/seqandoc/micro_razers/README
/usr/share/doc/seqan-doc/seqandoc/micro_razers/example
/usr/share/doc/seqan-doc/seqandoc/micro_razers/example/genome.fa
/usr/share/doc/seqan-doc/seqandoc/micro_razers/example/reads.fa
/usr/share/doc/seqan-doc/seqandoc/micro_razers/example/reads.fa.result
/usr/share/doc/seqan-doc/seqandoc/ngs_roi
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/LICENSE
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/R
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/R/ngsroi_0.1.tar.gz
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/R/ngsroi_0.1.zip
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/README
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/example
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/example/dmel.bed
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/example/dmel.gtf
/usr/share/doc/seqan-doc/seqandoc/ngs_roi/example/example.bam
/usr/share/doc/seqan-doc/seqandoc/pair_align
/usr/share/doc/seqan-doc/seqandoc/pair_align/LICENSE
/usr/share/doc/seqan-doc/seqandoc/pair_align/README
/usr/share/doc/seqan-doc/seqandoc/param_chooser
/usr/share/doc/seqan-doc/seqandoc/param_chooser/LICENSE
/usr/share/doc/seqan-doc/seqandoc/param_chooser/README
/usr/share/doc/seqan-doc/seqandoc/rabema
/usr/share/doc/seqan-doc/seqandoc/rabema/LICENSE
/usr/share/doc/seqan-doc/seqandoc/rabema/README
/usr/share/doc/seqan-doc/seqandoc/razers
/usr/share/doc/seqan-doc/seqandoc/razers/LICENSE
/usr/share/doc/seqan-doc/seqandoc/razers/README
/usr/share/doc/seqan-doc/seqandoc/razers/example
/usr/share/doc/seqan-doc/seqandoc/razers/example/genome.fa
/usr/share/doc/seqan-doc/seqandoc/razers/example/reads.fa
/usr/share/doc/seqan-doc/seqandoc/razers/example/reads2.fa
/usr/share/doc/seqan-doc/seqandoc/razers2
/usr/share/doc/seqan-doc/seqandoc/razers2/LICENSE
/usr/share/doc/seqan-doc/seqandoc/razers2/README
/usr/share/doc/seqan-doc/seqandoc/razers2/example
/usr/share/doc/seqan-doc/seqandoc/razers2/example/genome.fa
/usr/share/doc/seqan-doc/seqandoc/razers2/example/reads.fa
/usr/share/doc/seqan-doc/seqandoc/razers2/example/reads2.fa
/usr/share/doc/seqan-doc/seqandoc/razers3
/usr/share/doc/seqan-doc/seqandoc/razers3/LICENSE
/usr/share/doc/seqan-doc/seqandoc/razers3/README
/usr/share/doc/seqan-doc/seqandoc/razers3/example
/usr/share/doc/seqan-doc/seqandoc/razers3/example/genome.fa
/usr/share/doc/seqan-doc/seqandoc/razers3/example/reads.fa
/usr/share/doc/seqan-doc/seqandoc/razers3/example/reads2.fa
/usr/share/doc/seqan-doc/seqandoc/rep_sep
/usr/share/doc/seqan-doc/seqandoc/rep_sep/LICENSE
/usr/share/doc/seqan-doc/seqandoc/rep_sep/README
/usr/share/doc/seqan-doc/seqandoc/sak
/usr/share/doc/seqan-doc/seqandoc/sak/LICENSE
/usr/share/doc/seqan-doc/seqandoc/sak/README
/usr/share/doc/seqan-doc/seqandoc/sak/README.sak.txt
/usr/share/doc/seqan-doc/seqandoc/sak/man
/usr/share/doc/seqan-doc/seqandoc/sak/man/sak.1
/usr/share/doc/seqan-doc/seqandoc/sam2matrix
/usr/share/doc/seqan-doc/seqandoc/sam2matrix/LICENSE
/usr/share/doc/seqan-doc/seqandoc/sam2matrix/README
/usr/share/doc/seqan-doc/seqandoc/samcat
/usr/share/doc/seqan-doc/seqandoc/samcat/LICENSE
/usr/share/doc/seqan-doc/seqandoc/samcat/README
/usr/share/doc/seqan-doc/seqandoc/searchjoin
/usr/share/doc/seqan-doc/seqandoc/searchjoin/LICENSE
/usr/share/doc/seqan-doc/seqandoc/searchjoin/README
/usr/share/doc/seqan-doc/seqandoc/seqan_flexbar
/usr/share/doc/seqan-doc/seqandoc/seqan_flexbar/LICENSE
/usr/share/doc/seqan-doc/seqandoc/seqan_flexbar/README
/usr/share/doc/seqan-doc/seqandoc/seqan_tcoffee
/usr/share/doc/seqan-doc/seqandoc/seqan_tcoffee/LICENSE
/usr/share/doc/seqan-doc/seqandoc/seqan_tcoffee/README
/usr/share/doc/seqan-doc/seqandoc/seqan_tcoffee/example
/usr/share/doc/seqan-doc/seqandoc/seqan_tcoffee/example/seq.fa
/usr/share/doc/seqan-doc/seqandoc/seqcons
/usr/share/doc/seqan-doc/seqandoc/seqcons/LICENSE
/usr/share/doc/seqan-doc/seqandoc/seqcons/README
/usr/share/doc/seqan-doc/seqandoc/sgip
/usr/share/doc/seqan-doc/seqandoc/sgip/LICENSE
/usr/share/doc/seqan-doc/seqandoc/sgip/README
/usr/share/doc/seqan-doc/seqandoc/sgip/example
/usr/share/doc/seqan-doc/seqandoc/sgip/example/iso_m2D_m196.A01
/usr/share/doc/seqan-doc/seqandoc/sgip/example/iso_r01_m200.A00
/usr/share/doc/seqan-doc/seqandoc/sgip/example/iso_r01_m200.A01
/usr/share/doc/seqan-doc/seqandoc/sgip/example/iso_r01_m200.B00
/usr/share/doc/seqan-doc/seqandoc/sgip/example/iso_r01_m200.B01
/usr/share/doc/seqan-doc/seqandoc/sgip/example/latin-4
/usr/share/doc/seqan-doc/seqandoc/sgip/example/lattice-4
/usr/share/doc/seqan-doc/seqandoc/sgip/example/sts-7
/usr/share/doc/seqan-doc/seqandoc/snp_store
/usr/share/doc/seqan-doc/seqandoc/snp_store/LICENSE
/usr/share/doc/seqan-doc/seqandoc/snp_store/README
/usr/share/doc/seqan-doc/seqandoc/snp_store/example
/usr/share/doc/seqan-doc/seqandoc/snp_store/example/exampleGenome.fa
/usr/share/doc/seqan-doc/seqandoc/snp_store/example/exampleReads.gff
/usr/share/doc/seqan-doc/seqandoc/splazers
/usr/share/doc/seqan-doc/seqandoc/splazers/LICENSE
/usr/share/doc/seqan-doc/seqandoc/splazers/README
/usr/share/doc/seqan-doc/seqandoc/splazers/example
/usr/share/doc/seqan-doc/seqandoc/splazers/example/genome.fa
/usr/share/doc/seqan-doc/seqandoc/splazers/example/reads.fa
/usr/share/doc/seqan-doc/seqandoc/splazers/example/reads.fa.result
/usr/share/doc/seqan-doc/seqandoc/stellar
/usr/share/doc/seqan-doc/seqandoc/stellar/LICENSE
/usr/share/doc/seqan-doc/seqandoc/stellar/README
/usr/share/doc/seqan-doc/seqandoc/stellar/example
/usr/share/doc/seqan-doc/seqandoc/stellar/example/NC_001474.fasta
/usr/share/doc/seqan-doc/seqandoc/stellar/example/NC_001477.fasta
/usr/share/doc/seqan-doc/seqandoc/stellar/example/reads.fasta
/usr/share/doc/seqan-doc/seqandoc/tree_recon
/usr/share/doc/seqan-doc/seqandoc/tree_recon/LICENSE
/usr/share/doc/seqan-doc/seqandoc/tree_recon/README
/usr/share/doc/seqan-doc/seqandoc/tree_recon/example
/usr/share/doc/seqan-doc/seqandoc/tree_recon/example/example.dist
/usr/share/doc/seqan-doc/seqandoc/variant_comp
/usr/share/doc/seqan-doc/seqandoc/variant_comp/LICENSE
/usr/share/doc/seqan-doc/seqandoc/variant_comp/README
/usr/share/licenses/seqan-doc
/usr/share/licenses/seqan-doc/BSD.txt
/usr/share/licenses/seqan-doc/GPLv3+.txt
/usr/share/licenses/seqan-doc/LGPLv3+.txt
References
Summary
In this tutorial we learn how to install seqan-doc on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
