How To Install seqan on Fedora 36

In this tutorial we learn how to install seqan in Fedora 36. seqan is Open source C++ library of efficient algorithms and data structures

Introduction

In this tutorial we learn how to install seqan on Fedora 36.

What is `seqan`

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries.

We can use yum or dnf to install seqan on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install seqan.

Install seqan on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install seqan using dnf by running the following command:

sudo dnf -y install seqan

Install seqan on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install seqan using yum by running the following command:

sudo yum -y install seqan

How To Uninstall seqan on Fedora 36

To uninstall only the seqan package we can use the following command:

sudo dnf remove seqan

seqan Package Contents on Fedora 36

/usr/bin/alf
/usr/bin/bam2roi
/usr/bin/bed_sort.sh
/usr/bin/bisar
/usr/bin/breakpoint_calculator
/usr/bin/casbar
/usr/bin/compute_gain
/usr/bin/dfi
/usr/bin/fiona
/usr/bin/four2three
/usr/bin/fx_bam_coverage
/usr/bin/gff_sort.sh
/usr/bin/gustaf
/usr/bin/insegt
/usr/bin/mason
/usr/bin/mason_frag_sequencing
/usr/bin/mason_genome
/usr/bin/mason_materializer
/usr/bin/mason_simulator
/usr/bin/mason_variator
/usr/bin/micro_razers
/usr/bin/pair_align
/usr/bin/param_chooser
/usr/bin/plot.awk
/usr/bin/ps2pswLinks.gawk
/usr/bin/rabema_build_gold_standard
/usr/bin/rabema_evaluate
/usr/bin/rabema_prepare_sam
/usr/bin/razers
/usr/bin/razers2
/usr/bin/razers3
/usr/bin/rep_sep
/usr/bin/roi_feature_projection
/usr/bin/roi_plot_9.sh
/usr/bin/roi_plot_thumbnails
/usr/bin/roi_sort.sh
/usr/bin/sak
/usr/bin/sam2matrix
/usr/bin/samcat
/usr/bin/searchjoin
/usr/bin/seqan_flexbar
/usr/bin/seqan_tcoffee
/usr/bin/seqcons
/usr/bin/sgip
/usr/bin/snp_store
/usr/bin/splazers
/usr/bin/stellar
/usr/bin/tree_recon
/usr/bin/variant_comp
/usr/lib/.build-id
/usr/lib/.build-id/16
/usr/lib/.build-id/16/e20e1f41043c44103dac4f680f7b294e6bb036
/usr/lib/.build-id/1e
/usr/lib/.build-id/1e/c35c228e3c9fd67d3a82b487e6177b8724302d
/usr/lib/.build-id/26
/usr/lib/.build-id/26/1994d76e191ce0c9a430cef78ba7e671596eac
/usr/lib/.build-id/26/b469564e18a848c8f5a7c33fece284c4a9261e
/usr/lib/.build-id/2c
/usr/lib/.build-id/2c/7dcc7b252fa7c0ff9487fc77885b09dc25f821
/usr/lib/.build-id/2d
/usr/lib/.build-id/2d/5182ea2ef8b4d762dde0675b00c44d2422e28e
/usr/lib/.build-id/2e
/usr/lib/.build-id/2e/879d41f033d143f11a893aaea0a9099831d8bd
/usr/lib/.build-id/2e/f02b7c0005f10a2eeb263e3da46093e3f2dee7
/usr/lib/.build-id/34
/usr/lib/.build-id/34/c46d70acc31d73f8bd9e6fa18b371be582ccd0
/usr/lib/.build-id/45
/usr/lib/.build-id/45/54f20ec1d81545f0524564477f6bd3dc0357bb
/usr/lib/.build-id/47
/usr/lib/.build-id/47/aa1d2e98b79c78a4fb884c88a3a909e5d900da
/usr/lib/.build-id/48
/usr/lib/.build-id/48/6f7c5a8419c09a25d41d7573d7f7d7f0f5ea3a
/usr/lib/.build-id/49
/usr/lib/.build-id/49/883a8112ddde0366691bb21c52c7796e3146a9
/usr/lib/.build-id/4a
/usr/lib/.build-id/4a/95f1d0a0a330cb7b404843b3735ee1cd94722f
/usr/lib/.build-id/4f
/usr/lib/.build-id/4f/9c9b0c11c9f714703a66fec373f16f77db06ca
/usr/lib/.build-id/5b
/usr/lib/.build-id/5b/f261e860860a0aa48578a9ed0d42d45d6d5cbd
/usr/lib/.build-id/60
/usr/lib/.build-id/60/c4502bfb9a52a4de3b17f1059606c1629461b1
/usr/lib/.build-id/61
/usr/lib/.build-id/61/fe19ba02a914f99509b7b9e0dd0eb1b1dd8cee
/usr/lib/.build-id/65
/usr/lib/.build-id/65/3f9dd61a27183d8bd4ab27019f500c0ac7f344
/usr/lib/.build-id/65/9d17052f45fadc700c70933387e2226d0fe640
/usr/lib/.build-id/75
/usr/lib/.build-id/75/fa19df27e60899d0ae45f0ba02ed81134f79e0
/usr/lib/.build-id/77
/usr/lib/.build-id/77/b7bffa2cdd68abac7f0d34a7a18380435f8750
/usr/lib/.build-id/7e
/usr/lib/.build-id/7e/d4921866931509e1865a2966c4a294e64a5a16
/usr/lib/.build-id/8a
/usr/lib/.build-id/8a/3481a2eab8494ed0e943324e16b4b1d1b701cd
/usr/lib/.build-id/91
/usr/lib/.build-id/91/98dc2c8f556dc307f17e4df637bd8c92e44b0d
/usr/lib/.build-id/96
/usr/lib/.build-id/96/7c268dcd8c1feeb3e3a4c28ecbc721019176af
/usr/lib/.build-id/9c
/usr/lib/.build-id/9c/c2a24ea6dbd9b6327e3dadd19d460c7350c24a
/usr/lib/.build-id/9d
/usr/lib/.build-id/9d/2c2eedc62ab9b966305c3a11db68fe1fea03e7
/usr/lib/.build-id/a0
/usr/lib/.build-id/a0/bed1266d420bd17360b8d0a11c4da97234d7b9
/usr/lib/.build-id/a5
/usr/lib/.build-id/a5/9d717c96b7f2e70f92552ba9a40a460237bb5d
/usr/lib/.build-id/a7
/usr/lib/.build-id/a7/874b2f8a32c8ebf06fcc2c460312df77e69007
/usr/lib/.build-id/a8
/usr/lib/.build-id/a8/ea4c655125e6a98814bc4ce5ce668110e8c014
/usr/lib/.build-id/b0
/usr/lib/.build-id/b0/7b624b71438fe821a71233598bcee671d3128a
/usr/lib/.build-id/ba
/usr/lib/.build-id/ba/775fb0e1a4d42681ba1ee081a0dd5560d5da6a
/usr/lib/.build-id/bb
/usr/lib/.build-id/bb/d6338b987094f491c44ebfd598a83043b2bda7
/usr/lib/.build-id/cc
/usr/lib/.build-id/cc/589c6739cbdd9c7348b165b814b6af51b21bce
/usr/lib/.build-id/ce
/usr/lib/.build-id/ce/587f396bf97786c6f664fac5989fc6726aef2a
/usr/lib/.build-id/ce/c460a2718f237fa94a4980f74ed7cfffa7095d
/usr/lib/.build-id/d5
/usr/lib/.build-id/d5/017bc3a6113793e4f2e44fed3fb967654db525
/usr/lib/.build-id/db
/usr/lib/.build-id/db/5446c3485f10b6c37e7e2bfad05efddce7e602
/usr/lib/.build-id/e0
/usr/lib/.build-id/e0/ed4ec516ca436423b49936db0024239e72c53b
/usr/lib/.build-id/e7
/usr/lib/.build-id/e7/4f3049354daecea4e428566ca76298e5c54407
/usr/lib/.build-id/e7/b5707804327f59955c05509c006a3fb01d9b6a
/usr/share/doc/seqan
/usr/share/doc/seqan/README.rst
/usr/share/licenses/seqan
/usr/share/licenses/seqan/BSD.txt
/usr/share/licenses/seqan/GPLv3+.txt
/usr/share/licenses/seqan/LGPLv3+.txt

References

seqan website

Summary

In this tutorial we learn how to install seqan on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).