How To Install R-Rhtslib on Fedora 36
In this tutorial we learn how to install R-Rhtslib in Fedora 36. R-Rhtslib is HTSlib high-throughput sequencing library as an R package
Introduction
In this tutorial we learn how to install R-Rhtslib on Fedora 36.
What is R-Rhtslib
This package provides version 1.7 of the ‘HTSlib’ C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package=“Rhtslib”, “Rhtslib”).
We can use yum or dnf to install R-Rhtslib on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install R-Rhtslib.
Install R-Rhtslib on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install R-Rhtslib using dnf by running the following command:
sudo dnf -y install R-Rhtslib
Install R-Rhtslib on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install R-Rhtslib using yum by running the following command:
sudo yum -y install R-Rhtslib
How To Uninstall R-Rhtslib on Fedora 36
To uninstall only the R-Rhtslib package we can use the following command:
sudo dnf remove R-Rhtslib
R-Rhtslib Package Contents on Fedora 36
/usr/lib/.build-id
/usr/lib/.build-id/04
/usr/lib/.build-id/04/78d7642e3372dcb8d3f567ee99436eeae7f9fe
/usr/lib/.build-id/31
/usr/lib/.build-id/31/a3c23dbf8eda4b2fedbd7331fb512bcd5cabcd
/usr/lib64/R/library/Rhtslib
/usr/lib64/R/library/Rhtslib/DESCRIPTION
/usr/lib64/R/library/Rhtslib/INDEX
/usr/lib64/R/library/Rhtslib/Meta
/usr/lib64/R/library/Rhtslib/Meta/Rd.rds
/usr/lib64/R/library/Rhtslib/Meta/features.rds
/usr/lib64/R/library/Rhtslib/Meta/hsearch.rds
/usr/lib64/R/library/Rhtslib/Meta/links.rds
/usr/lib64/R/library/Rhtslib/Meta/nsInfo.rds
/usr/lib64/R/library/Rhtslib/Meta/package.rds
/usr/lib64/R/library/Rhtslib/Meta/vignette.rds
/usr/lib64/R/library/Rhtslib/NAMESPACE
/usr/lib64/R/library/Rhtslib/NEWS
/usr/lib64/R/library/Rhtslib/R
/usr/lib64/R/library/Rhtslib/R/Rhtslib
/usr/lib64/R/library/Rhtslib/R/Rhtslib.rdb
/usr/lib64/R/library/Rhtslib/R/Rhtslib.rdx
/usr/lib64/R/library/Rhtslib/doc
/usr/lib64/R/library/Rhtslib/doc/Rhtslib.R
/usr/lib64/R/library/Rhtslib/doc/Rhtslib.Rmd
/usr/lib64/R/library/Rhtslib/doc/Rhtslib.html
/usr/lib64/R/library/Rhtslib/doc/index.html
/usr/lib64/R/library/Rhtslib/help
/usr/lib64/R/library/Rhtslib/help/AnIndex
/usr/lib64/R/library/Rhtslib/help/Rhtslib-package.html
/usr/lib64/R/library/Rhtslib/help/Rhtslib.html
/usr/lib64/R/library/Rhtslib/help/Rhtslib.rdb
/usr/lib64/R/library/Rhtslib/help/Rhtslib.rdx
/usr/lib64/R/library/Rhtslib/help/aliases.rds
/usr/lib64/R/library/Rhtslib/help/htsVersion.html
/usr/lib64/R/library/Rhtslib/help/paths.rds
/usr/lib64/R/library/Rhtslib/help/pkgconfig.html
/usr/lib64/R/library/Rhtslib/html
/usr/lib64/R/library/Rhtslib/html/00Index.html
/usr/lib64/R/library/Rhtslib/html/R.css
/usr/lib64/R/library/Rhtslib/html/Rhtslib-package.html
/usr/lib64/R/library/Rhtslib/html/pkgconfig.html
/usr/lib64/R/library/Rhtslib/libs
/usr/lib64/R/library/Rhtslib/libs/Rhtslib.so
/usr/lib64/R/library/Rhtslib/testdata
/usr/lib64/R/library/Rhtslib/testdata/auxf#values.sam
/usr/lib64/R/library/Rhtslib/testdata/auxf#values_java.cram
/usr/lib64/R/library/Rhtslib/testdata/auxf.fa
/usr/lib64/R/library/Rhtslib/testdata/auxf.fa.fai
/usr/lib64/R/library/Rhtslib/testdata/c1#bounds.sam
/usr/lib64/R/library/Rhtslib/testdata/c1#clip.sam
/usr/lib64/R/library/Rhtslib/testdata/c1#noseq.sam
/usr/lib64/R/library/Rhtslib/testdata/c1#pad1.sam
/usr/lib64/R/library/Rhtslib/testdata/c1#pad2.sam
/usr/lib64/R/library/Rhtslib/testdata/c1#pad3.sam
/usr/lib64/R/library/Rhtslib/testdata/c1#unknown.sam
/usr/lib64/R/library/Rhtslib/testdata/c1.fa
/usr/lib64/R/library/Rhtslib/testdata/c1.fa.fai
/usr/lib64/R/library/Rhtslib/testdata/c2#pad.sam
/usr/lib64/R/library/Rhtslib/testdata/c2.fa
/usr/lib64/R/library/Rhtslib/testdata/c2.fa.fai
/usr/lib64/R/library/Rhtslib/testdata/ce#1.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#2.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#5.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#5b.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#5b_java.cram
/usr/lib64/R/library/Rhtslib/testdata/ce#large_seq.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#supp.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#tag_depadded.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#tag_padded.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#unmap.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#unmap1.sam
/usr/lib64/R/library/Rhtslib/testdata/ce#unmap2.sam
/usr/lib64/R/library/Rhtslib/testdata/ce.fa
/usr/lib64/R/library/Rhtslib/testdata/ce.fa.fai
/usr/lib64/R/library/Rhtslib/testdata/faidx.fa
/usr/lib64/R/library/Rhtslib/testdata/fieldarith.sam
/usr/lib64/R/library/Rhtslib/testdata/formatcols.vcf
/usr/lib64/R/library/Rhtslib/testdata/formatmissing-out.vcf
/usr/lib64/R/library/Rhtslib/testdata/formatmissing.vcf
/usr/lib64/R/library/Rhtslib/testdata/md#1.sam
/usr/lib64/R/library/Rhtslib/testdata/md.fa
/usr/lib64/R/library/Rhtslib/testdata/md.fa.fai
/usr/lib64/R/library/Rhtslib/testdata/noroundtrip-out.vcf
/usr/lib64/R/library/Rhtslib/testdata/noroundtrip.vcf
/usr/lib64/R/library/Rhtslib/testdata/tabix
/usr/lib64/R/library/Rhtslib/testdata/tabix/bed_file.bed
/usr/lib64/R/library/Rhtslib/testdata/tabix/gff_file.gff
/usr/lib64/R/library/Rhtslib/testdata/tabix/large_chr.vcf
/usr/lib64/R/library/Rhtslib/testdata/tabix/vcf_file.vcf
/usr/lib64/R/library/Rhtslib/testdata/test-vcf-hdr-in.vcf
/usr/lib64/R/library/Rhtslib/testdata/xx#blank.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#large_aux.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#large_aux2.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#large_aux_java.cram
/usr/lib64/R/library/Rhtslib/testdata/xx#minimal.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#pair.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#repeated.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#rg.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#tlen.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#tlen2.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#triplet.sam
/usr/lib64/R/library/Rhtslib/testdata/xx#unsorted.sam
/usr/lib64/R/library/Rhtslib/testdata/xx.fa
/usr/lib64/R/library/Rhtslib/testdata/xx.fa.fai
/usr/lib64/R/library/Rhtslib/usrlib
/usr/lib64/R/library/Rhtslib/usrlib/libhts.so
/usr/lib64/R/library/Rhtslib/usrlib/libhts.so.2
References
Summary
In this tutorial we learn how to install R-Rhtslib on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
title: “How To Install R-Rhtslib on Fedora 36” linkTitle: “R-Rhtslib” type: “docs” description: “In this tutorial we learn how to install R-Rhtslib in Fedora 36. R-Rhtslib is HTSlib high-throughput sequencing library as an R package” date: “2022-08-17” lastmod: “2022-08-17” #image: /images/fedora/36/R-Rhtslib-featured.png
Introduction
In this tutorial we learn how to install R-Rhtslib on Fedora 36.
What is R-Rhtslib
This package provides version 1.7 of the ‘HTSlib’ C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package=“Rhtslib”, “Rhtslib”).
We can use yum or dnf to install R-Rhtslib on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install R-Rhtslib.
Install R-Rhtslib on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install R-Rhtslib using dnf by running the following command:
sudo dnf -y install R-Rhtslib
Install R-Rhtslib on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install R-Rhtslib using yum by running the following command:
sudo yum -y install R-Rhtslib
How To Uninstall R-Rhtslib on Fedora 36
To uninstall only the R-Rhtslib package we can use the following command:
sudo dnf remove R-Rhtslib
R-Rhtslib Package Contents on Fedora 36
/usr/lib/.build-id
/usr/lib/.build-id/72
/usr/lib/.build-id/72/7d7c1c3d238cd9f4409afd512460352f9beffc
/usr/lib/.build-id/b4
/usr/lib/.build-id/b4/187ef4223751c9c9a8cd7d4ccc5fb5ecbe7542
/usr/lib/R/library/Rhtslib
/usr/lib/R/library/Rhtslib/DESCRIPTION
/usr/lib/R/library/Rhtslib/INDEX
/usr/lib/R/library/Rhtslib/Meta
/usr/lib/R/library/Rhtslib/Meta/Rd.rds
/usr/lib/R/library/Rhtslib/Meta/features.rds
/usr/lib/R/library/Rhtslib/Meta/hsearch.rds
/usr/lib/R/library/Rhtslib/Meta/links.rds
/usr/lib/R/library/Rhtslib/Meta/nsInfo.rds
/usr/lib/R/library/Rhtslib/Meta/package.rds
/usr/lib/R/library/Rhtslib/Meta/vignette.rds
/usr/lib/R/library/Rhtslib/NAMESPACE
/usr/lib/R/library/Rhtslib/NEWS
/usr/lib/R/library/Rhtslib/R
/usr/lib/R/library/Rhtslib/R/Rhtslib
/usr/lib/R/library/Rhtslib/R/Rhtslib.rdb
/usr/lib/R/library/Rhtslib/R/Rhtslib.rdx
/usr/lib/R/library/Rhtslib/doc
/usr/lib/R/library/Rhtslib/doc/Rhtslib.R
/usr/lib/R/library/Rhtslib/doc/Rhtslib.Rmd
/usr/lib/R/library/Rhtslib/doc/Rhtslib.html
/usr/lib/R/library/Rhtslib/doc/index.html
/usr/lib/R/library/Rhtslib/help
/usr/lib/R/library/Rhtslib/help/AnIndex
/usr/lib/R/library/Rhtslib/help/Rhtslib-package.html
/usr/lib/R/library/Rhtslib/help/Rhtslib.html
/usr/lib/R/library/Rhtslib/help/Rhtslib.rdb
/usr/lib/R/library/Rhtslib/help/Rhtslib.rdx
/usr/lib/R/library/Rhtslib/help/aliases.rds
/usr/lib/R/library/Rhtslib/help/htsVersion.html
/usr/lib/R/library/Rhtslib/help/paths.rds
/usr/lib/R/library/Rhtslib/help/pkgconfig.html
/usr/lib/R/library/Rhtslib/html
/usr/lib/R/library/Rhtslib/html/00Index.html
/usr/lib/R/library/Rhtslib/html/R.css
/usr/lib/R/library/Rhtslib/html/Rhtslib-package.html
/usr/lib/R/library/Rhtslib/html/pkgconfig.html
/usr/lib/R/library/Rhtslib/libs
/usr/lib/R/library/Rhtslib/libs/Rhtslib.so
/usr/lib/R/library/Rhtslib/testdata
/usr/lib/R/library/Rhtslib/testdata/auxf#values.sam
/usr/lib/R/library/Rhtslib/testdata/auxf#values_java.cram
/usr/lib/R/library/Rhtslib/testdata/auxf.fa
/usr/lib/R/library/Rhtslib/testdata/auxf.fa.fai
/usr/lib/R/library/Rhtslib/testdata/c1#bounds.sam
/usr/lib/R/library/Rhtslib/testdata/c1#clip.sam
/usr/lib/R/library/Rhtslib/testdata/c1#noseq.sam
/usr/lib/R/library/Rhtslib/testdata/c1#pad1.sam
/usr/lib/R/library/Rhtslib/testdata/c1#pad2.sam
/usr/lib/R/library/Rhtslib/testdata/c1#pad3.sam
/usr/lib/R/library/Rhtslib/testdata/c1#unknown.sam
/usr/lib/R/library/Rhtslib/testdata/c1.fa
/usr/lib/R/library/Rhtslib/testdata/c1.fa.fai
/usr/lib/R/library/Rhtslib/testdata/c2#pad.sam
/usr/lib/R/library/Rhtslib/testdata/c2.fa
/usr/lib/R/library/Rhtslib/testdata/c2.fa.fai
/usr/lib/R/library/Rhtslib/testdata/ce#1.sam
/usr/lib/R/library/Rhtslib/testdata/ce#2.sam
/usr/lib/R/library/Rhtslib/testdata/ce#5.sam
/usr/lib/R/library/Rhtslib/testdata/ce#5b.sam
/usr/lib/R/library/Rhtslib/testdata/ce#5b_java.cram
/usr/lib/R/library/Rhtslib/testdata/ce#large_seq.sam
/usr/lib/R/library/Rhtslib/testdata/ce#supp.sam
/usr/lib/R/library/Rhtslib/testdata/ce#tag_depadded.sam
/usr/lib/R/library/Rhtslib/testdata/ce#tag_padded.sam
/usr/lib/R/library/Rhtslib/testdata/ce#unmap.sam
/usr/lib/R/library/Rhtslib/testdata/ce#unmap1.sam
/usr/lib/R/library/Rhtslib/testdata/ce#unmap2.sam
/usr/lib/R/library/Rhtslib/testdata/ce.fa
/usr/lib/R/library/Rhtslib/testdata/ce.fa.fai
/usr/lib/R/library/Rhtslib/testdata/faidx.fa
/usr/lib/R/library/Rhtslib/testdata/fieldarith.sam
/usr/lib/R/library/Rhtslib/testdata/formatcols.vcf
/usr/lib/R/library/Rhtslib/testdata/formatmissing-out.vcf
/usr/lib/R/library/Rhtslib/testdata/formatmissing.vcf
/usr/lib/R/library/Rhtslib/testdata/md#1.sam
/usr/lib/R/library/Rhtslib/testdata/md.fa
/usr/lib/R/library/Rhtslib/testdata/md.fa.fai
/usr/lib/R/library/Rhtslib/testdata/noroundtrip-out.vcf
/usr/lib/R/library/Rhtslib/testdata/noroundtrip.vcf
/usr/lib/R/library/Rhtslib/testdata/tabix
/usr/lib/R/library/Rhtslib/testdata/tabix/bed_file.bed
/usr/lib/R/library/Rhtslib/testdata/tabix/gff_file.gff
/usr/lib/R/library/Rhtslib/testdata/tabix/large_chr.vcf
/usr/lib/R/library/Rhtslib/testdata/tabix/vcf_file.vcf
/usr/lib/R/library/Rhtslib/testdata/test-vcf-hdr-in.vcf
/usr/lib/R/library/Rhtslib/testdata/xx#blank.sam
/usr/lib/R/library/Rhtslib/testdata/xx#large_aux.sam
/usr/lib/R/library/Rhtslib/testdata/xx#large_aux2.sam
/usr/lib/R/library/Rhtslib/testdata/xx#large_aux_java.cram
/usr/lib/R/library/Rhtslib/testdata/xx#minimal.sam
/usr/lib/R/library/Rhtslib/testdata/xx#pair.sam
/usr/lib/R/library/Rhtslib/testdata/xx#repeated.sam
/usr/lib/R/library/Rhtslib/testdata/xx#rg.sam
/usr/lib/R/library/Rhtslib/testdata/xx#tlen.sam
/usr/lib/R/library/Rhtslib/testdata/xx#tlen2.sam
/usr/lib/R/library/Rhtslib/testdata/xx#triplet.sam
/usr/lib/R/library/Rhtslib/testdata/xx#unsorted.sam
/usr/lib/R/library/Rhtslib/testdata/xx.fa
/usr/lib/R/library/Rhtslib/testdata/xx.fa.fai
/usr/lib/R/library/Rhtslib/usrlib
/usr/lib/R/library/Rhtslib/usrlib/libhts.so
/usr/lib/R/library/Rhtslib/usrlib/libhts.so.2
References
Summary
In this tutorial we learn how to install R-Rhtslib on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).