How To Install R-KEGGREST on Fedora 36

In this tutorial we learn how to install R-KEGGREST in Fedora 36. R-KEGGREST is Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes

Introduction

In this tutorial we learn how to install R-KEGGREST on Fedora 36.

What is `R-KEGGREST`

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

We can use yum or dnf to install R-KEGGREST on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install R-KEGGREST.

Install R-KEGGREST on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install R-KEGGREST using dnf by running the following command:

sudo dnf -y install R-KEGGREST

Install R-KEGGREST on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install R-KEGGREST using yum by running the following command:

sudo yum -y install R-KEGGREST

How To Uninstall R-KEGGREST on Fedora 36

To uninstall only the R-KEGGREST package we can use the following command:

sudo dnf remove R-KEGGREST

R-KEGGREST Package Contents on Fedora 36

/usr/share/R/library/KEGGREST
/usr/share/R/library/KEGGREST/DESCRIPTION
/usr/share/R/library/KEGGREST/INDEX
/usr/share/R/library/KEGGREST/Meta
/usr/share/R/library/KEGGREST/Meta/Rd.rds
/usr/share/R/library/KEGGREST/Meta/features.rds
/usr/share/R/library/KEGGREST/Meta/hsearch.rds
/usr/share/R/library/KEGGREST/Meta/links.rds
/usr/share/R/library/KEGGREST/Meta/nsInfo.rds
/usr/share/R/library/KEGGREST/Meta/package.rds
/usr/share/R/library/KEGGREST/Meta/vignette.rds
/usr/share/R/library/KEGGREST/NAMESPACE
/usr/share/R/library/KEGGREST/NEWS
/usr/share/R/library/KEGGREST/R
/usr/share/R/library/KEGGREST/R/KEGGREST
/usr/share/R/library/KEGGREST/R/KEGGREST.rdb
/usr/share/R/library/KEGGREST/R/KEGGREST.rdx
/usr/share/R/library/KEGGREST/doc
/usr/share/R/library/KEGGREST/doc/KEGGREST-vignette.R
/usr/share/R/library/KEGGREST/doc/KEGGREST-vignette.Rmd
/usr/share/R/library/KEGGREST/doc/KEGGREST-vignette.html
/usr/share/R/library/KEGGREST/doc/index.html
/usr/share/R/library/KEGGREST/help
/usr/share/R/library/KEGGREST/help/AnIndex
/usr/share/R/library/KEGGREST/help/KEGGREST.rdb
/usr/share/R/library/KEGGREST/help/KEGGREST.rdx
/usr/share/R/library/KEGGREST/help/aliases.rds
/usr/share/R/library/KEGGREST/help/bconv.html
/usr/share/R/library/KEGGREST/help/color.pathway.by.objects.html
/usr/share/R/library/KEGGREST/help/conv.html
/usr/share/R/library/KEGGREST/help/info.html
/usr/share/R/library/KEGGREST/help/keggConv.html
/usr/share/R/library/KEGGREST/help/keggFind.html
/usr/share/R/library/KEGGREST/help/keggGet.html
/usr/share/R/library/KEGGREST/help/keggInfo.html
/usr/share/R/library/KEGGREST/help/keggLink.html
/usr/share/R/library/KEGGREST/help/keggList.html
/usr/share/R/library/KEGGREST/help/link.html
/usr/share/R/library/KEGGREST/help/listDatabases.html
/usr/share/R/library/KEGGREST/help/mark.pathway.by.objects.html
/usr/share/R/library/KEGGREST/help/paths.rds
/usr/share/R/library/KEGGREST/html
/usr/share/R/library/KEGGREST/html/00Index.html
/usr/share/R/library/KEGGREST/html/R.css
/usr/share/R/library/KEGGREST/html/keggConv.html
/usr/share/R/library/KEGGREST/html/keggFind.html
/usr/share/R/library/KEGGREST/html/keggGet.html
/usr/share/R/library/KEGGREST/html/keggInfo.html
/usr/share/R/library/KEGGREST/html/keggLink.html
/usr/share/R/library/KEGGREST/html/keggList.html
/usr/share/R/library/KEGGREST/html/listDatabases.html
/usr/share/R/library/KEGGREST/html/mark.pathway.by.objects.html
/usr/share/R/library/KEGGREST/unitTests
/usr/share/R/library/KEGGREST/unitTests/test_KEGGREST.R

References

R-KEGGREST website

Summary

In this tutorial we learn how to install R-KEGGREST on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).