How To Install R-coda on Fedora 36

In this tutorial we learn how to install R-coda in Fedora 36. R-coda is Output Analysis and Diagnostics for MCMC

Introduction

In this tutorial we learn how to install R-coda on Fedora 36.

What is `R-coda`

Provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.

We can use yum or dnf to install R-coda on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install R-coda.

Install R-coda on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install R-coda using dnf by running the following command:

sudo dnf -y install R-coda

Install R-coda on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install R-coda using yum by running the following command:

sudo yum -y install R-coda

How To Uninstall R-coda on Fedora 36

To uninstall only the R-coda package we can use the following command:

sudo dnf remove R-coda

R-coda Package Contents on Fedora 36

/usr/share/R/library/coda
/usr/share/R/library/coda/AUTHORS
/usr/share/R/library/coda/CITATION
/usr/share/R/library/coda/DESCRIPTION
/usr/share/R/library/coda/INDEX
/usr/share/R/library/coda/Meta
/usr/share/R/library/coda/Meta/Rd.rds
/usr/share/R/library/coda/Meta/data.rds
/usr/share/R/library/coda/Meta/features.rds
/usr/share/R/library/coda/Meta/hsearch.rds
/usr/share/R/library/coda/Meta/links.rds
/usr/share/R/library/coda/Meta/nsInfo.rds
/usr/share/R/library/coda/Meta/package.rds
/usr/share/R/library/coda/NAMESPACE
/usr/share/R/library/coda/R
/usr/share/R/library/coda/R/coda
/usr/share/R/library/coda/R/coda.rdb
/usr/share/R/library/coda/R/coda.rdx
/usr/share/R/library/coda/data
/usr/share/R/library/coda/data/line.rda
/usr/share/R/library/coda/help
/usr/share/R/library/coda/help/+5B.mcmc.html
/usr/share/R/library/coda/help/+5B.mcmc.list.html
/usr/share/R/library/coda/help/.Coda.Options.Default.html
/usr/share/R/library/coda/help/.Coda.Options.html
/usr/share/R/library/coda/help/AnIndex
/usr/share/R/library/coda/help/Cramer.html
/usr/share/R/library/coda/help/HPDinterval.html
/usr/share/R/library/coda/help/HPDinterval.mcmc.html
/usr/share/R/library/coda/help/HPDinterval.mcmc.list.html
/usr/share/R/library/coda/help/acfplot.html
/usr/share/R/library/coda/help/acfplot.mcmc.html
/usr/share/R/library/coda/help/acfplot.mcmc.list.html
/usr/share/R/library/coda/help/aliases.rds
/usr/share/R/library/coda/help/as.array.mcmc.list.html
/usr/share/R/library/coda/help/as.matrix.mcmc.html
/usr/share/R/library/coda/help/as.matrix.mcmc.list.html
/usr/share/R/library/coda/help/as.mcmc.default.html
/usr/share/R/library/coda/help/as.mcmc.html
/usr/share/R/library/coda/help/as.mcmc.list.default.html
/usr/share/R/library/coda/help/as.mcmc.list.html
/usr/share/R/library/coda/help/as.mcmc.mcmc.list.html
/usr/share/R/library/coda/help/as.ts.mcmc.html
/usr/share/R/library/coda/help/autocorr.diag.html
/usr/share/R/library/coda/help/autocorr.diag.mcmc.html
/usr/share/R/library/coda/help/autocorr.diag.mcmc.list.html
/usr/share/R/library/coda/help/autocorr.html
/usr/share/R/library/coda/help/autocorr.plot.html
/usr/share/R/library/coda/help/batchSE.html
/usr/share/R/library/coda/help/bugs2jags.html
/usr/share/R/library/coda/help/chanames+3C-.html
/usr/share/R/library/coda/help/chanames.html
/usr/share/R/library/coda/help/coda.options.html
/usr/share/R/library/coda/help/coda.rdb
/usr/share/R/library/coda/help/coda.rdx
/usr/share/R/library/coda/help/codamenu.html
/usr/share/R/library/coda/help/crosscorr.html
/usr/share/R/library/coda/help/crosscorr.plot.html
/usr/share/R/library/coda/help/cumuplot.html
/usr/share/R/library/coda/help/densityplot.mcmc.html
/usr/share/R/library/coda/help/densityplot.mcmc.list.html
/usr/share/R/library/coda/help/densplot.html
/usr/share/R/library/coda/help/display.coda.options.html
/usr/share/R/library/coda/help/effectiveSize.html
/usr/share/R/library/coda/help/end.mcmc.html
/usr/share/R/library/coda/help/end.mcmc.list.html
/usr/share/R/library/coda/help/frequency.mcmc.html
/usr/share/R/library/coda/help/gelman.diag.html
/usr/share/R/library/coda/help/gelman.plot.html
/usr/share/R/library/coda/help/geweke.diag.html
/usr/share/R/library/coda/help/geweke.plot.html
/usr/share/R/library/coda/help/heidel.diag.html
/usr/share/R/library/coda/help/is.mcmc.html
/usr/share/R/library/coda/help/is.mcmc.list.html
/usr/share/R/library/coda/help/levelplot.mcmc.html
/usr/share/R/library/coda/help/levelplot.mcmc.list.html
/usr/share/R/library/coda/help/line.html
/usr/share/R/library/coda/help/linepost.html
/usr/share/R/library/coda/help/mcmc.convert.html
/usr/share/R/library/coda/help/mcmc.html
/usr/share/R/library/coda/help/mcmc.list.html
/usr/share/R/library/coda/help/mcmc.subset.html
/usr/share/R/library/coda/help/mcmcUpgrade.html
/usr/share/R/library/coda/help/mcpar.html
/usr/share/R/library/coda/help/multi.menu.html
/usr/share/R/library/coda/help/nchain.html
/usr/share/R/library/coda/help/niter.html
/usr/share/R/library/coda/help/nvar.html
/usr/share/R/library/coda/help/paths.rds
/usr/share/R/library/coda/help/pcramer.html
/usr/share/R/library/coda/help/plot.mcmc.html
/usr/share/R/library/coda/help/plot.mcmc.list.html
/usr/share/R/library/coda/help/print.mcmc.html
/usr/share/R/library/coda/help/qqmath.mcmc.html
/usr/share/R/library/coda/help/qqmath.mcmc.list.html
/usr/share/R/library/coda/help/raftery.diag.html
/usr/share/R/library/coda/help/read.and.check.html
/usr/share/R/library/coda/help/read.coda.html
/usr/share/R/library/coda/help/read.coda.interactive.html
/usr/share/R/library/coda/help/read.jags.html
/usr/share/R/library/coda/help/read.openbugs.html
/usr/share/R/library/coda/help/rejectionRate.html
/usr/share/R/library/coda/help/rejectionRate.mcmc.html
/usr/share/R/library/coda/help/rejectionRate.mcmc.list.html
/usr/share/R/library/coda/help/spectrum0.ar.html
/usr/share/R/library/coda/help/spectrum0.html
/usr/share/R/library/coda/help/start.mcmc.html
/usr/share/R/library/coda/help/start.mcmc.list.html
/usr/share/R/library/coda/help/summary.mcmc.html
/usr/share/R/library/coda/help/summary.mcmc.list.html
/usr/share/R/library/coda/help/thin.html
/usr/share/R/library/coda/help/thin.mcmc.html
/usr/share/R/library/coda/help/thin.mcmc.list.html
/usr/share/R/library/coda/help/time.mcmc.html
/usr/share/R/library/coda/help/time.mcmc.list.html
/usr/share/R/library/coda/help/traceplot.html
/usr/share/R/library/coda/help/trellisplots.html
/usr/share/R/library/coda/help/varnames+3C-.html
/usr/share/R/library/coda/help/varnames.html
/usr/share/R/library/coda/help/window.mcmc.html
/usr/share/R/library/coda/help/window.mcmc.list.html
/usr/share/R/library/coda/help/xyplot.mcmc.html
/usr/share/R/library/coda/help/xyplot.mcmc.list.html
/usr/share/R/library/coda/html
/usr/share/R/library/coda/html/00Index.html
/usr/share/R/library/coda/html/Cramer.html
/usr/share/R/library/coda/html/HPDinterval.html
/usr/share/R/library/coda/html/R.css
/usr/share/R/library/coda/html/as.ts.mcmc.html
/usr/share/R/library/coda/html/autocorr.diag.html
/usr/share/R/library/coda/html/autocorr.html
/usr/share/R/library/coda/html/autocorr.plot.html
/usr/share/R/library/coda/html/batchSE.html
/usr/share/R/library/coda/html/bugs2jags.html
/usr/share/R/library/coda/html/coda.options.html
/usr/share/R/library/coda/html/codamenu.html
/usr/share/R/library/coda/html/crosscorr.html
/usr/share/R/library/coda/html/crosscorr.plot.html
/usr/share/R/library/coda/html/cumuplot.html
/usr/share/R/library/coda/html/densplot.html
/usr/share/R/library/coda/html/effectiveSize.html
/usr/share/R/library/coda/html/gelman.diag.html
/usr/share/R/library/coda/html/gelman.plot.html
/usr/share/R/library/coda/html/geweke.diag.html
/usr/share/R/library/coda/html/geweke.plot.html
/usr/share/R/library/coda/html/heidel.diag.html
/usr/share/R/library/coda/html/linepost.html
/usr/share/R/library/coda/html/mcmc.convert.html
/usr/share/R/library/coda/html/mcmc.html
/usr/share/R/library/coda/html/mcmc.list.html
/usr/share/R/library/coda/html/mcmc.subset.html
/usr/share/R/library/coda/html/mcmcUpgrade.html
/usr/share/R/library/coda/html/mcpar.html
/usr/share/R/library/coda/html/multi.menu.html
/usr/share/R/library/coda/html/nchain.html
/usr/share/R/library/coda/html/plot.mcmc.html
/usr/share/R/library/coda/html/raftery.diag.html
/usr/share/R/library/coda/html/read.and.check.html
/usr/share/R/library/coda/html/read.coda.html
/usr/share/R/library/coda/html/read.coda.interactive.html
/usr/share/R/library/coda/html/read.openbugs.html
/usr/share/R/library/coda/html/rejectionRate.html
/usr/share/R/library/coda/html/spectrum0.ar.html
/usr/share/R/library/coda/html/spectrum0.html
/usr/share/R/library/coda/html/summary.mcmc.html
/usr/share/R/library/coda/html/thin.html
/usr/share/R/library/coda/html/time.mcmc.html
/usr/share/R/library/coda/html/traceplot.html
/usr/share/R/library/coda/html/trellisplots.html
/usr/share/R/library/coda/html/varnames.html
/usr/share/R/library/coda/html/window.mcmc.html

References

R-coda website

Summary

In this tutorial we learn how to install R-coda on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).