How To Install python3-pysb on Fedora 36

In this tutorial we learn how to install python3-pysb in Fedora 36. python3-pysb is Rule-based modeling of biochemical systems as Python programs

Introduction

In this tutorial we learn how to install python3-pysb on Fedora 36.

What is python3-pysb

PySB is a framework for building mathematical models of biochemical systems as Python programs. PySB abstracts the complex process of creating equations describing interactions among multiple proteins or other biomolecules into a simple and intuitive domain specific programming language, which is internally translated into BioNetGen or Kappa rules and from there into systems of equations. PySB makes it straightforward to divide models into modules and to call libraries of reusable elements (macros) that encode standard biochemical actions. These features promote model transparency, reuse and accuracy. PySB also interoperates with standard scientific Python libraries such as NumPy, SciPy and SymPy enabling model simulation and analysis.

We can use yum or dnf to install python3-pysb on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install python3-pysb.

Install python3-pysb on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install python3-pysb using dnf by running the following command:

sudo dnf -y install python3-pysb

Install python3-pysb on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install python3-pysb using yum by running the following command:

sudo yum -y install python3-pysb

How To Uninstall python3-pysb on Fedora 36

To uninstall only the python3-pysb package we can use the following command:

sudo dnf remove python3-pysb

python3-pysb Package Contents on Fedora 36

/usr/bin/pysb_export
/usr/lib/python3.10/site-packages/pysb
/usr/lib/python3.10/site-packages/pysb-1.13.1-py3.10.egg-info
/usr/lib/python3.10/site-packages/pysb-1.13.1-py3.10.egg-info/PKG-INFO
/usr/lib/python3.10/site-packages/pysb-1.13.1-py3.10.egg-info/SOURCES.txt
/usr/lib/python3.10/site-packages/pysb-1.13.1-py3.10.egg-info/dependency_links.txt
/usr/lib/python3.10/site-packages/pysb-1.13.1-py3.10.egg-info/requires.txt
/usr/lib/python3.10/site-packages/pysb-1.13.1-py3.10.egg-info/top_level.txt
/usr/lib/python3.10/site-packages/pysb/__init__.py
/usr/lib/python3.10/site-packages/pysb/__pycache__
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References

Summary

In this tutorial we learn how to install python3-pysb on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).