How To Install python3-pysam on Fedora 36
In this tutorial we learn how to install python3-pysam in Fedora 36. python3-pysam is pysam
Introduction
In this tutorial we learn how to install python3-pysam on Fedora 36.
What is python3-pysam
pysam - a python module for reading, manipulating and writing genomic data sets.pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
We can use yum or dnf to install python3-pysam on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install python3-pysam.
Install python3-pysam on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install python3-pysam using dnf by running the following command:
sudo dnf -y install python3-pysam
Install python3-pysam on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install python3-pysam using yum by running the following command:
sudo yum -y install python3-pysam
How To Uninstall python3-pysam on Fedora 36
To uninstall only the python3-pysam package we can use the following command:
sudo dnf remove python3-pysam
python3-pysam Package Contents on Fedora 36
/usr/lib/.build-id
/usr/lib/.build-id/08
/usr/lib/.build-id/08/542f4e1e1cdbf588488521269e7d565e27b6cf
/usr/lib/.build-id/1e
/usr/lib/.build-id/1e/8b8d69dafdea3593b33a3d8b8267eac8b1f553
/usr/lib/.build-id/2c
/usr/lib/.build-id/2c/663c350d5331c79b0eb3185cc3fa1cf3cee874
/usr/lib/.build-id/30
/usr/lib/.build-id/30/58e73c599f68e363a08d6fe79dbb7c966e030a
/usr/lib/.build-id/47
/usr/lib/.build-id/47/79f6583735aaa4fb45c4d46b879f112c49fa7f
/usr/lib/.build-id/5e
/usr/lib/.build-id/5e/4ad3cc833b5bfcf353c4a9e1218f8d857211bd
/usr/lib/.build-id/7f
/usr/lib/.build-id/7f/f8db1c8a52e1e5ba77ba10b9f7a9d5bbcc1f9e
/usr/lib/.build-id/82
/usr/lib/.build-id/82/10a65a94d5a417ebc27d5be89e485b95712e91
/usr/lib/.build-id/95
/usr/lib/.build-id/95/1bc3b938214fd527bb388c312d152862755fa0
/usr/lib/.build-id/bf
/usr/lib/.build-id/bf/fa977bd80879d7837712f693fff3ea889c4fe8
/usr/lib/.build-id/e2
/usr/lib/.build-id/e2/ba192722b8803a9574b61d84734765b9d7b8e0
/usr/lib/.build-id/e2/fd3b2d0e629c246bd8f41893a1050edbe8a066
/usr/lib/.build-id/fa
/usr/lib/.build-id/fa/7bb8c3bc6626b824899478c66892100342fb06
/usr/lib64/python3.10/site-packages/pysam
/usr/lib64/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info
/usr/lib64/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/PKG-INFO
/usr/lib64/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/SOURCES.txt
/usr/lib64/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/dependency_links.txt
/usr/lib64/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/not-zip-safe
/usr/lib64/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/top_level.txt
/usr/lib64/python3.10/site-packages/pysam/Pileup.py
/usr/lib64/python3.10/site-packages/pysam/__init__.py
/usr/lib64/python3.10/site-packages/pysam/__pycache__
/usr/lib64/python3.10/site-packages/pysam/__pycache__/Pileup.cpython-310.opt-1.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/Pileup.cpython-310.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/__init__.cpython-310.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/bcftools.cpython-310.opt-1.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/bcftools.cpython-310.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/config.cpython-310.opt-1.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/config.cpython-310.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/samtools.cpython-310.opt-1.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/samtools.cpython-310.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/utils.cpython-310.opt-1.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/utils.cpython-310.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/version.cpython-310.opt-1.pyc
/usr/lib64/python3.10/site-packages/pysam/__pycache__/version.cpython-310.pyc
/usr/lib64/python3.10/site-packages/pysam/bcftools.py
/usr/lib64/python3.10/site-packages/pysam/config.py
/usr/lib64/python3.10/site-packages/pysam/libcalignedsegment.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcalignmentfile.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcbcf.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcbcftools.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcbgzf.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcfaidx.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libchtslib.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcsamfile.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcsamtools.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libctabix.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libctabixproxies.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcutils.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/libcvcf.cpython-310-x86_64-linux-gnu.so
/usr/lib64/python3.10/site-packages/pysam/samtools.py
/usr/lib64/python3.10/site-packages/pysam/utils.py
/usr/lib64/python3.10/site-packages/pysam/version.py
/usr/share/doc/python3-pysam
/usr/share/doc/python3-pysam/README.rst
/usr/share/licenses/python3-pysam
/usr/share/licenses/python3-pysam/COPYING
References
Summary
In this tutorial we learn how to install python3-pysam on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
title: “How To Install python3-pysam on Fedora 36” linkTitle: “python3-pysam” type: “docs” description: “In this tutorial we learn how to install python3-pysam in Fedora 36. python3-pysam is pysam” date: “2022-08-17” lastmod: “2022-08-17” #image: /images/fedora/36/python3-pysam-featured.png
Introduction
In this tutorial we learn how to install python3-pysam on Fedora 36.
What is python3-pysam
pysam - a python module for reading, manipulating and writing genomic data sets.pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
We can use yum or dnf to install python3-pysam on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install python3-pysam.
Install python3-pysam on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install python3-pysam using dnf by running the following command:
sudo dnf -y install python3-pysam
Install python3-pysam on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install python3-pysam using yum by running the following command:
sudo yum -y install python3-pysam
How To Uninstall python3-pysam on Fedora 36
To uninstall only the python3-pysam package we can use the following command:
sudo dnf remove python3-pysam
python3-pysam Package Contents on Fedora 36
/usr/lib/.build-id
/usr/lib/.build-id/02
/usr/lib/.build-id/02/c8a551663b21a2778918a31556a2c75ae41884
/usr/lib/.build-id/16
/usr/lib/.build-id/16/ea54d21111e52f62fcb926e4a266294f203331
/usr/lib/.build-id/3f
/usr/lib/.build-id/3f/a1716e641a13e78fbf9d22566168330da14fd8
/usr/lib/.build-id/48
/usr/lib/.build-id/48/03e091732ba8282d70e05a7ad4e3d5f4bb393f
/usr/lib/.build-id/69
/usr/lib/.build-id/69/4ef22c9b26880ead3f316e0400e441c1a72f20
/usr/lib/.build-id/71
/usr/lib/.build-id/71/303df04aa5d3d46134bc02f644eedcccda8e42
/usr/lib/.build-id/76
/usr/lib/.build-id/76/fe2078b52b50b6f3bac5edc25ccf9852c2489c
/usr/lib/.build-id/7a
/usr/lib/.build-id/7a/339853c947904320d04c0eeb621be712a57b3d
/usr/lib/.build-id/81
/usr/lib/.build-id/81/e02f31acace2eb4fae808c7f5cec5c777cd677
/usr/lib/.build-id/b6
/usr/lib/.build-id/b6/43867da90632e03cfdcade3bea4b5ca2aca828
/usr/lib/.build-id/c5
/usr/lib/.build-id/c5/3ee350c94ddfd43f7ece8280fe3973543fa095
/usr/lib/.build-id/c7
/usr/lib/.build-id/c7/c21ad5b5e3430b9f9f0fd46c47535edc30a741
/usr/lib/.build-id/ca
/usr/lib/.build-id/ca/d648fe154aedb7b50511d3d354f15687068355
/usr/lib/python3.10/site-packages/pysam
/usr/lib/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info
/usr/lib/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/PKG-INFO
/usr/lib/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/SOURCES.txt
/usr/lib/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/dependency_links.txt
/usr/lib/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/not-zip-safe
/usr/lib/python3.10/site-packages/pysam-0.18.0-py3.10.egg-info/top_level.txt
/usr/lib/python3.10/site-packages/pysam/Pileup.py
/usr/lib/python3.10/site-packages/pysam/__init__.py
/usr/lib/python3.10/site-packages/pysam/__pycache__
/usr/lib/python3.10/site-packages/pysam/__pycache__/Pileup.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/Pileup.cpython-310.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/bcftools.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/bcftools.cpython-310.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/config.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/config.cpython-310.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/samtools.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/samtools.cpython-310.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/utils.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/utils.cpython-310.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/version.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/pysam/__pycache__/version.cpython-310.pyc
/usr/lib/python3.10/site-packages/pysam/bcftools.py
/usr/lib/python3.10/site-packages/pysam/config.py
/usr/lib/python3.10/site-packages/pysam/libcalignedsegment.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcalignmentfile.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcbcf.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcbcftools.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcbgzf.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcfaidx.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libchtslib.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcsamfile.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcsamtools.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libctabix.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libctabixproxies.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcutils.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/libcvcf.cpython-310-i386-linux-gnu.so
/usr/lib/python3.10/site-packages/pysam/samtools.py
/usr/lib/python3.10/site-packages/pysam/utils.py
/usr/lib/python3.10/site-packages/pysam/version.py
/usr/share/doc/python3-pysam
/usr/share/doc/python3-pysam/README.rst
/usr/share/licenses/python3-pysam
/usr/share/licenses/python3-pysam/COPYING
References
Summary
In this tutorial we learn how to install python3-pysam on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
