How To Install python3-exdir on Fedora 36
In this tutorial we learn how to install python3-exdir in Fedora 36. python3-exdir is Directory structure standard for experimental pipelines
Introduction
In this tutorial we learn how to install python3-exdir on Fedora 36.
What is python3-exdir
Experimental Directory Structure (exdir) is a proposed, open specification for experimental pipelines. Exdir is currently a prototype published to invite researchers to give feedback on the standard. Exdir is an hierarchical format based on open standards. It is inspired by already existing formats, such as HDF5 and NumPy, and attempts to solve some of the problems assosciated with these while retaining their benefits. The development of exdir owes a great deal to the efforts of others to standardize data formats in science in general and neuroscience in particular, among them the Klusta Kwik Team and Neurodata Without Borders.
We can use yum or dnf to install python3-exdir on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install python3-exdir.
Install python3-exdir on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install python3-exdir using dnf by running the following command:
sudo dnf -y install python3-exdir
Install python3-exdir on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install python3-exdir using yum by running the following command:
sudo yum -y install python3-exdir
How To Uninstall python3-exdir on Fedora 36
To uninstall only the python3-exdir package we can use the following command:
sudo dnf remove python3-exdir
python3-exdir Package Contents on Fedora 36
/etc/jupyter/jupyter_notebook_config.d/exdir.json
/etc/jupyter/nbconfig/notebook.d/exdir.json
/usr/lib/python3.10/site-packages/exdir
/usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info
/usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info/INSTALLER
/usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info/LICENSE
/usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info/METADATA
/usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info/WHEEL
/usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info/top_level.txt
/usr/lib/python3.10/site-packages/exdir/__init__.py
/usr/lib/python3.10/site-packages/exdir/__pycache__
/usr/lib/python3.10/site-packages/exdir/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/__pycache__/_version.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/__pycache__/_version.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/_version.py
/usr/lib/python3.10/site-packages/exdir/core
/usr/lib/python3.10/site-packages/exdir/core/__init__.py
/usr/lib/python3.10/site-packages/exdir/core/__pycache__
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/attribute.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/attribute.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/constants.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/constants.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/dataset.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/dataset.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/exdir_file.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/exdir_file.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/exdir_object.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/exdir_object.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/group.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/group.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/mode.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/mode.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/raw.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/raw.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/validation.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/core/__pycache__/validation.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/core/attribute.py
/usr/lib/python3.10/site-packages/exdir/core/constants.py
/usr/lib/python3.10/site-packages/exdir/core/dataset.py
/usr/lib/python3.10/site-packages/exdir/core/exdir_file.py
/usr/lib/python3.10/site-packages/exdir/core/exdir_object.py
/usr/lib/python3.10/site-packages/exdir/core/group.py
/usr/lib/python3.10/site-packages/exdir/core/mode.py
/usr/lib/python3.10/site-packages/exdir/core/raw.py
/usr/lib/python3.10/site-packages/exdir/core/validation.py
/usr/lib/python3.10/site-packages/exdir/plugin_interface
/usr/lib/python3.10/site-packages/exdir/plugin_interface/__init__.py
/usr/lib/python3.10/site-packages/exdir/plugin_interface/__pycache__
/usr/lib/python3.10/site-packages/exdir/plugin_interface/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/plugin_interface/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/plugin_interface/__pycache__/plugin_interface.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/plugin_interface/__pycache__/plugin_interface.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/plugin_interface/plugin_interface.py
/usr/lib/python3.10/site-packages/exdir/plugins
/usr/lib/python3.10/site-packages/exdir/plugins/__init__.py
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/git_lfs.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/git_lfs.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/numpy_attributes.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/numpy_attributes.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/quantities.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/__pycache__/quantities.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/plugins/git_lfs.py
/usr/lib/python3.10/site-packages/exdir/plugins/numpy_attributes.py
/usr/lib/python3.10/site-packages/exdir/plugins/quantities.py
/usr/lib/python3.10/site-packages/exdir/static
/usr/lib/python3.10/site-packages/exdir/static/index.js
/usr/lib/python3.10/site-packages/exdir/utils
/usr/lib/python3.10/site-packages/exdir/utils/__init__.py
/usr/lib/python3.10/site-packages/exdir/utils/__pycache__
/usr/lib/python3.10/site-packages/exdir/utils/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/utils/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/utils/__pycache__/display.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/utils/__pycache__/display.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/utils/__pycache__/path.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/exdir/utils/__pycache__/path.cpython-310.pyc
/usr/lib/python3.10/site-packages/exdir/utils/display.py
/usr/lib/python3.10/site-packages/exdir/utils/path.py
/usr/share/doc/python3-exdir
/usr/share/doc/python3-exdir/README.md
/usr/share/jupyter/nbextensions/exdir
/usr/share/jupyter/nbextensions/exdir/index.js
References
Summary
In this tutorial we learn how to install python3-exdir on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).