How To Install percolator on Fedora 36

In this tutorial we learn how to install percolator in Fedora 36. percolator is Software for postprocessing of shotgun proteomics data

Introduction

In this tutorial we learn how to install percolator on Fedora 36.

What is percolator

The first step in analyzing an mass spectrometry assay is to match the harvested spectra against a target database using database search engines such as Sequest and Mascot, a process that renders list of peptide-spectrum matches. However, it is not trivial to assess the accuracy of these identifications. Percolator uses a semi-supervised machine learning to discriminate correct from incorrect peptide-spectrum matches, and calculates accurate statistics such as q-value (FDR) and posterior error probabilities.

We can use yum or dnf to install percolator on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install percolator.

Install percolator on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install percolator using dnf by running the following command:

sudo dnf -y install percolator

Install percolator on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install percolator using yum by running the following command:

sudo yum -y install percolator

How To Uninstall percolator on Fedora 36

To uninstall only the percolator package we can use the following command:

sudo dnf remove percolator

percolator Package Contents on Fedora 36

/usr/bin/elude
/usr/bin/msgf2pin
/usr/bin/percolator
/usr/bin/qvality
/usr/bin/sqt2pin
/usr/bin/tandem2pin
/usr/lib/.build-id
/usr/lib/.build-id/07
/usr/lib/.build-id/07/159500a90e7f47967a5ffe22670f0a306ec29f
/usr/lib/.build-id/a3
/usr/lib/.build-id/a3/9bfbdff5304e7839ed25a915fe0fcc5e958a68
/usr/lib/.build-id/b8
/usr/lib/.build-id/b8/20a491c263eee5c59359eb0e4d8c540e06c72d
/usr/lib/.build-id/bf
/usr/lib/.build-id/bf/55a56ad1be5ebbae6282cd1d32b763e52a21c3
/usr/lib/.build-id/dd
/usr/lib/.build-id/dd/b0c080ca69c88ec33764fbb739f3c10ef3ba4b
/usr/lib/.build-id/ef
/usr/lib/.build-id/ef/056db2acfe24721e3841263181e1d97b76c515

References

Summary

In this tutorial we learn how to install percolator on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).

title: “How To Install percolator on Fedora 36” linkTitle: “percolator” type: “docs” description: “In this tutorial we learn how to install percolator in Fedora 36. percolator is Software for postprocessing of shotgun proteomics data” date: “2022-08-17” lastmod: “2022-08-17” #image: /images/fedora/36/percolator-featured.png

Introduction

In this tutorial we learn how to install percolator on Fedora 36.

What is percolator

The first step in analyzing an mass spectrometry assay is to match the harvested spectra against a target database using database search engines such as Sequest and Mascot, a process that renders list of peptide-spectrum matches. However, it is not trivial to assess the accuracy of these identifications. Percolator uses a semi-supervised machine learning to discriminate correct from incorrect peptide-spectrum matches, and calculates accurate statistics such as q-value (FDR) and posterior error probabilities.

We can use yum or dnf to install percolator on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install percolator.

Install percolator on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install percolator using dnf by running the following command:

sudo dnf -y install percolator

Install percolator on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install percolator using yum by running the following command:

sudo yum -y install percolator

How To Uninstall percolator on Fedora 36

To uninstall only the percolator package we can use the following command:

sudo dnf remove percolator

percolator Package Contents on Fedora 36

/usr/bin/elude
/usr/bin/msgf2pin
/usr/bin/percolator
/usr/bin/qvality
/usr/bin/sqt2pin
/usr/bin/tandem2pin
/usr/lib/.build-id
/usr/lib/.build-id/0a
/usr/lib/.build-id/0a/9f23b5dad675e52565db0585d2554b8b0800a8
/usr/lib/.build-id/12
/usr/lib/.build-id/12/f6df89900f7a93faedc162d3c9d4c8bc94e910
/usr/lib/.build-id/31
/usr/lib/.build-id/31/7d13cdaf887d83ce4e0124cf2e8383d799e17c
/usr/lib/.build-id/8e
/usr/lib/.build-id/8e/43bbcf9759b356838688a1fd6f2317402dca15
/usr/lib/.build-id/c5
/usr/lib/.build-id/c5/e679551174dc3d59eeaab2c95ba6470240d7a7
/usr/lib/.build-id/f0
/usr/lib/.build-id/f0/3bcad9a4874cd2e3c7fc5912d17b3570be5f35

References

Summary

In this tutorial we learn how to install percolator on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).