How To Install lagan on Fedora 36

In this tutorial we learn how to install lagan in Fedora 36. lagan is Local, global, and multiple alignment of DNA sequences

Introduction

In this tutorial we learn how to install lagan on Fedora 36.

What is lagan

LAGAN toolkit is a set of tools for local, global, and multiple alignment of DNA sequences. Please visit http describing LAGAN and its components. The 4 main parts of LAGAN are 1. CHAOS local alignment tool 2. LAGAN pairwise global alignment tool 3. MLAGAN multiple global alignment tool. 4. Shuffle-LAGAN pairwise global alignment

We can use yum or dnf to install lagan on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install lagan.

Install lagan on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install lagan using dnf by running the following command:

sudo dnf -y install lagan

Install lagan on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install lagan using yum by running the following command:

sudo yum -y install lagan

How To Uninstall lagan on Fedora 36

To uninstall only the lagan package we can use the following command:

sudo dnf remove lagan

lagan Package Contents on Fedora 36

/usr/bin/chaos
/usr/bin/lagan
/usr/bin/mlagan
/usr/bin/prolagan
/usr/bin/slagan
/usr/lib/.build-id
/usr/lib/.build-id/07
/usr/lib/.build-id/07/d8cbb5b45d626824f512de97a5d7c75354faee
/usr/lib/.build-id/18
/usr/lib/.build-id/18/c4f457ef3ad85b68ee4e8e5c74908528a4cdd8
/usr/lib/.build-id/21
/usr/lib/.build-id/21/308e3862915b4d7c718483534c4b8d9a1ede4d
/usr/lib/.build-id/37
/usr/lib/.build-id/37/001fd9c8a13ba3745283e1883f6e02eab9ab5e
/usr/lib/.build-id/3a
/usr/lib/.build-id/3a/a8473dba1db42637d98f37ec393edeb56f5645
/usr/lib/.build-id/49
/usr/lib/.build-id/49/e24b846f0bd77c3722a54df9c6ac02fc549069
/usr/lib/.build-id/4a
/usr/lib/.build-id/4a/03e1c7c4f4b916b04280c1f507fb76a82a1db7
/usr/lib/.build-id/4b
/usr/lib/.build-id/4b/5a83e5d42850aa8c69782f4b371030a1b506fc
/usr/lib/.build-id/58
/usr/lib/.build-id/58/ff77e7b1738f1fc0306ca96e77afa51747a18a
/usr/lib/.build-id/65
/usr/lib/.build-id/65/7ed6ca1fa58129619416f5309a432f66107d4d
/usr/lib/.build-id/7d
/usr/lib/.build-id/7d/600256d11976f0beaf644f70d87098abe11469
/usr/lib/.build-id/7d/e071858b09cde66f3e3bc5fba96868c2cced42
/usr/lib/.build-id/7e
/usr/lib/.build-id/7e/f40d48e3671f16659cd68d16d00c5d502d0a84
/usr/lib/.build-id/84
/usr/lib/.build-id/84/059e9c1906da96861946f5f73b0f916d4ff7e7
/usr/lib/.build-id/9c
/usr/lib/.build-id/9c/25f06146394da70074bd0f110f753f85c20cf5
/usr/lib/.build-id/9c/ffc001e26a74cbec73d7e3a5cda8d0e973de8d
/usr/lib/.build-id/bd
/usr/lib/.build-id/bd/72ecf1b5db5061d180e64080661ff1a9c8035f
/usr/lib/.build-id/cc
/usr/lib/.build-id/cc/9d058178995c77ff11b6a5ec250984733ab26d
/usr/lib/.build-id/d3
/usr/lib/.build-id/d3/3a797a8e7062fef4d4065797ba8a2c66fccf89
/usr/lib/.build-id/d3/c18744d8b1e1e1791682928c066d46867c307a
/usr/lib/.build-id/e6
/usr/lib/.build-id/e6/de83fb10868b7ccd63487a0f038188c778fd23
/usr/lib/.build-id/e7
/usr/lib/.build-id/e7/360c12fe033de76cfd81ba6afc04152571069e
/usr/lib/.build-id/ee
/usr/lib/.build-id/ee/4fcfc4b840300a4c45ae1aee2d91f07cbacf00
/usr/lib64/lagan
/usr/lib64/lagan/anal_gloc.pl
/usr/lib64/lagan/anchors
/usr/lib64/lagan/blosum62.txt
/usr/lib64/lagan/blosum62s.txt
/usr/lib64/lagan/glocal
/usr/lib64/lagan/nucmatrix.txt
/usr/lib64/lagan/order
/usr/lib64/lagan/rechaos.pl
/usr/lib64/lagan/supermap.pl
/usr/lib64/lagan/test.score
/usr/lib64/lagan/utils
/usr/lib64/lagan/utils/Glue
/usr/lib64/lagan/utils/bin2bl
/usr/lib64/lagan/utils/bin2mf
/usr/lib64/lagan/utils/cextract
/usr/lib64/lagan/utils/cmerge2.pl
/usr/lib64/lagan/utils/contigorder
/usr/lib64/lagan/utils/cstat
/usr/lib64/lagan/utils/dotplot
/usr/lib64/lagan/utils/draft.pl
/usr/lib64/lagan/utils/fa2xfa
/usr/lib64/lagan/utils/getbounds
/usr/lib64/lagan/utils/getcontigpos
/usr/lib64/lagan/utils/getlength
/usr/lib64/lagan/utils/getoverlap
/usr/lib64/lagan/utils/mextract.pl
/usr/lib64/lagan/utils/mf2bin.pl
/usr/lib64/lagan/utils/mpretty.pl
/usr/lib64/lagan/utils/mproject.pl
/usr/lib64/lagan/utils/mrun.pl
/usr/lib64/lagan/utils/mrunfile.pl
/usr/lib64/lagan/utils/mrunpairs.pl
/usr/lib64/lagan/utils/mviz.pl
/usr/lib64/lagan/utils/overlay
/usr/lib64/lagan/utils/rc
/usr/lib64/lagan/utils/scorealign
/usr/lib64/lagan/utils/scorecontigs
/usr/lib64/lagan/utils/seqmerge
/usr/lib64/lagan/xmfa2mfa.pl
/usr/share/doc/lagan
/usr/share/doc/lagan/LICENSE
/usr/share/doc/lagan/README.FIRST
/usr/share/doc/lagan/README.chaos
/usr/share/doc/lagan/README.lagan
/usr/share/doc/lagan/README.mlagan
/usr/share/doc/lagan/README.shuffle
/usr/share/doc/lagan/README.tools
/usr/share/doc/lagan/sample.fasta
/usr/share/doc/lagan/sample.params

References

Summary

In this tutorial we learn how to install lagan on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).