How To Install jneuroml-core-doc on Fedora 36

In this tutorial we learn how to install jneuroml-core-doc in Fedora 36. jneuroml-core-doc is NeuroML2 core documentation, schemas, and examples

Introduction

In this tutorial we learn how to install jneuroml-core-doc on Fedora 36.

What is `jneuroml-core-doc`

This repository contains the NeuroML 2 Schema, the ComponentType definitions in LEMS and a number of example files in NeuroML 2 and LEMS files for running simulations. For more details on LEMS and NeuroML 2 see Robert C. Cannon, Padraig Gleeson, Sharon Crook, Gautham Ganapathy, Boris Marin, Eugenio Piasini and R. Angus Silver, LEMS complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2, Frontiers in Neuroinformatics 2014, doi

We can use yum or dnf to install jneuroml-core-doc on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install jneuroml-core-doc.

Install jneuroml-core-doc on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install jneuroml-core-doc using dnf by running the following command:

sudo dnf -y install jneuroml-core-doc

Install jneuroml-core-doc on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install jneuroml-core-doc using yum by running the following command:

sudo yum -y install jneuroml-core-doc

How To Uninstall jneuroml-core-doc on Fedora 36

To uninstall only the jneuroml-core-doc package we can use the following command:

sudo dnf remove jneuroml-core-doc

jneuroml-core-doc Package Contents on Fedora 36

/usr/share/doc/jneuroml-core-doc
/usr/share/doc/jneuroml-core-doc/HISTORY.md
/usr/share/doc/jneuroml-core-doc/LEMSexamples
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex0_IaF.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex10_Q10.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex11_STDP.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex12_Net2.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex13_Instances.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex14_PyNN.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex15_CaDynamics.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex16_Inputs.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex17_Tissue.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex18_GHK.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex19_GapJunctions.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex19a_GapJunctionInstances.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex1_HH.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex20_AnalogSynapses.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex20a_AnalogSynapsesHH.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex21_CurrentBasedSynapses.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex22_PinskyRinzelCA3.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex23_Spiketimes.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex24_FractionalConductance.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex25_MultiComp.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex26_Weights.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex27_MultiSynapses.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex2_Izh.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex3_Net.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex4_KS.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex4a_KS.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex5_DetCell.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex6_NMDA.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex7_STP.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex8_AdEx.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/LEMS_NML2_Ex9_FN.xml
/usr/share/doc/jneuroml-core-doc/LEMSexamples/results
/usr/share/doc/jneuroml-core-doc/LEMSexamples/results/README
/usr/share/doc/jneuroml-core-doc/LEMSexamples/test
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/Cells.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/Channels.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/Inputs.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/Networks.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/NeuroML2CoreTypes.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/NeuroMLCoreCompTypes.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/NeuroMLCoreDimensions.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/PyNN.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/Simulation.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/Synapses.xml
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/results
/usr/share/doc/jneuroml-core-doc/NeuroML2CoreTypes/results/README
/usr/share/doc/jneuroml-core-doc/Schemas
/usr/share/doc/jneuroml-core-doc/Schemas/LEMS
/usr/share/doc/jneuroml-core-doc/Schemas/LEMS/README
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2.0.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2alpha.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2beta.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2beta1.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2beta2.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2beta3.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2beta4.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/NeuroML_v2beta5.xsd
/usr/share/doc/jneuroml-core-doc/Schemas/NeuroML2/README
/usr/share/doc/jneuroml-core-doc/Schemas/README
/usr/share/doc/jneuroml-core-doc/docs
/usr/share/doc/jneuroml-core-doc/docs/Cells.html
/usr/share/doc/jneuroml-core-doc/docs/Channels.html
/usr/share/doc/jneuroml-core-doc/docs/Inputs.html
/usr/share/doc/jneuroml-core-doc/docs/Networks.html
/usr/share/doc/jneuroml-core-doc/docs/NeuroMLCoreCompTypes.html
/usr/share/doc/jneuroml-core-doc/docs/NeuroMLCoreDimensions.html
/usr/share/doc/jneuroml-core-doc/docs/PyNN.html
/usr/share/doc/jneuroml-core-doc/docs/README.md
/usr/share/doc/jneuroml-core-doc/docs/Synapses.html
/usr/share/doc/jneuroml-core-doc/docs/UsingLEMSWithNeuroML2.md
/usr/share/doc/jneuroml-core-doc/docs/assets
/usr/share/doc/jneuroml-core-doc/docs/assets/css
/usr/share/doc/jneuroml-core-doc/docs/assets/css/bootstrap.css
/usr/share/doc/jneuroml-core-doc/docs/generate.py
/usr/share/doc/jneuroml-core-doc/examples
/usr/share/doc/jneuroml-core-doc/examples/NML2_AbstractCells.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_AnalogSynapses.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_AnalogSynapsesHH.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_FullCell.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_FullNeuroML.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_GapJunctionInstances.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_GapJunctions.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_InhomogeneousParams.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_Inputs.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_InstanceBasedNetwork.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_MultiCompCellNetwork.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_PyNNCells.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_SegmentConnections.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_SimpleIonChannel.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_SimpleMorphology.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_SingleCompHHCell.nml
/usr/share/doc/jneuroml-core-doc/examples/NML2_SynapseTypes.nml
/usr/share/doc/jneuroml-core-doc/examples/NeuroML2_To_HTML
/usr/share/doc/jneuroml-core-doc/examples/NeuroML2_To_HTML/NeuroML2_To_HTML.xsl
/usr/share/doc/jneuroml-core-doc/examples/NeuroML2_To_HTML/README.md
/usr/share/doc/jneuroml-core-doc/examples/NeuroML2_To_HTML/convert.py
/usr/share/doc/jneuroml-core-doc/examples/README
/usr/share/doc/jneuroml-core-doc/examples/temp
/usr/share/doc/jneuroml-core-doc/examples/temp/NML2_PyNNCells.nml
/usr/share/licenses/jneuroml-core-doc
/usr/share/licenses/jneuroml-core-doc/LICENSE.lesser

References

jneuroml-core-doc website

Summary

In this tutorial we learn how to install jneuroml-core-doc on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).