How To Install hmmer on Fedora 36
Introduction
In this tutorial we learn how to install hmmer on Fedora 36.
What is hmmer
Profile hidden Markov models (profile HMMs) can be used to do sensitive database searching using statistical descriptions of a sequence family’s consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
We can use yum or dnf to install hmmer on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install hmmer.
Install hmmer on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install hmmer using dnf by running the following command:
sudo dnf -y install hmmer
Install hmmer on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install hmmer using yum by running the following command:
sudo yum -y install hmmer
How To Uninstall hmmer on Fedora 36
To uninstall only the hmmer package we can use the following command:
sudo dnf remove hmmer
hmmer Package Contents on Fedora 36
/usr/bin/alimask
/usr/bin/hmmalign
/usr/bin/hmmbuild
/usr/bin/hmmc2
/usr/bin/hmmconvert
/usr/bin/hmmemit
/usr/bin/hmmerfm-exactmatch
/usr/bin/hmmfetch
/usr/bin/hmmlogo
/usr/bin/hmmpgmd
/usr/bin/hmmpress
/usr/bin/hmmscan
/usr/bin/hmmsearch
/usr/bin/hmmsim
/usr/bin/hmmstat
/usr/bin/jackhmmer
/usr/bin/makehmmerdb
/usr/bin/nhmmer
/usr/bin/nhmmscan
/usr/bin/phmmer
/usr/lib/.build-id
/usr/lib/.build-id/10
/usr/lib/.build-id/10/284f6acd17540bd22712ff3db039e1f5264bc9
/usr/lib/.build-id/1c
/usr/lib/.build-id/1c/12010427b6450ebf6d27c863743417ff9e430f
/usr/lib/.build-id/3a
/usr/lib/.build-id/3a/49e51e4235466c488c07f951098d3aa0795214
/usr/lib/.build-id/44
/usr/lib/.build-id/44/23017ca6268c2df6d012b15793fd8fbc00905b
/usr/lib/.build-id/45
/usr/lib/.build-id/45/299a9155ad05585e560c1a275eef1e4f537d0d
/usr/lib/.build-id/66
/usr/lib/.build-id/66/e103247157d42afdd0d3792bf33f8be1aa225c
/usr/lib/.build-id/69
/usr/lib/.build-id/69/8135327d5588160e7ffc7e21da1cf37ea09417
/usr/lib/.build-id/70
/usr/lib/.build-id/70/ff9a0b36b570801cacd4690881c4113efe3432
/usr/lib/.build-id/77
/usr/lib/.build-id/77/82572cb26732139c435793289c11234b3ecb06
/usr/lib/.build-id/78
/usr/lib/.build-id/78/faef2aac54a16b6000aea763e362e3847b64b6
/usr/lib/.build-id/85
/usr/lib/.build-id/85/2930c9a0d703c73d0414d8e235b8a17e74d764
/usr/lib/.build-id/9e
/usr/lib/.build-id/9e/87813259017ea1dcdd23a12bf4f2b9b7949334
/usr/lib/.build-id/a0
/usr/lib/.build-id/a0/324853c7ebd49b64dd2d4e79e53dfcb8cfc25c
/usr/lib/.build-id/aa
/usr/lib/.build-id/aa/d51cdd85a828ed700fb120d1e4f24dac539430
/usr/lib/.build-id/d7
/usr/lib/.build-id/d7/b878b456219e8ea5991b5398375a8f218abc5a
/usr/lib/.build-id/da
/usr/lib/.build-id/da/d41015b8429af8c3a34068e61f686844456ec1
/usr/lib/.build-id/dd
/usr/lib/.build-id/dd/27e02852d86a45032507a7bf2368db62f43911
/usr/lib/.build-id/e7
/usr/lib/.build-id/e7/51f65fff8bb680be0273a19140fca00b7153a7
/usr/lib/.build-id/e8
/usr/lib/.build-id/e8/8e1a8748b2d8dc6010219d5d5c9dd2998b29ea
/usr/lib/.build-id/fa
/usr/lib/.build-id/fa/7fd63c7410a72d27b1bfda501cfc2d40f23f1d
/usr/share/licenses/hmmer
/usr/share/licenses/hmmer/LICENSE
/usr/share/man/man1/alimask.1.gz
/usr/share/man/man1/hmmalign.1.gz
/usr/share/man/man1/hmmbuild.1.gz
/usr/share/man/man1/hmmconvert.1.gz
/usr/share/man/man1/hmmemit.1.gz
/usr/share/man/man1/hmmer.1.gz
/usr/share/man/man1/hmmfetch.1.gz
/usr/share/man/man1/hmmlogo.1.gz
/usr/share/man/man1/hmmpgmd.1.gz
/usr/share/man/man1/hmmpress.1.gz
/usr/share/man/man1/hmmscan.1.gz
/usr/share/man/man1/hmmsearch.1.gz
/usr/share/man/man1/hmmsim.1.gz
/usr/share/man/man1/hmmstat.1.gz
/usr/share/man/man1/jackhmmer.1.gz
/usr/share/man/man1/makehmmerdb.1.gz
/usr/share/man/man1/nhmmer.1.gz
/usr/share/man/man1/nhmmscan.1.gz
/usr/share/man/man1/phmmer.1.gz
References
Summary
In this tutorial we learn how to install hmmer on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
