How To Install EMBOSS on Fedora 36

In this tutorial we learn how to install EMBOSS in Fedora 36. EMBOSS is The European Molecular Biology Open Software Suite

Introduction

In this tutorial we learn how to install EMBOSS on Fedora 36.

What is EMBOSS

EMBOSS is a new, free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. Reference for EMBOSS “EMBOSS Trends in Genetics June 2000, vol 16, No 6. pp.276-277

We can use yum or dnf to install EMBOSS on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install EMBOSS.

Install EMBOSS on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install EMBOSS using dnf by running the following command:

sudo dnf -y install EMBOSS

Install EMBOSS on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install EMBOSS using yum by running the following command:

sudo yum -y install EMBOSS

How To Uninstall EMBOSS on Fedora 36

To uninstall only the EMBOSS package we can use the following command:

sudo dnf remove EMBOSS

EMBOSS Package Contents on Fedora 36

/etc/profile.d/emboss.csh
/etc/profile.d/emboss.sh
/usr/bin/aaindexextract
/usr/bin/abiview
/usr/bin/acdc
/usr/bin/acdgalaxy
/usr/bin/acdlog
/usr/bin/acdpretty
/usr/bin/acdtable
/usr/bin/acdtrace
/usr/bin/acdvalid
/usr/bin/aligncopy
/usr/bin/aligncopypair
/usr/bin/antigenic
/usr/bin/assemblyget
/usr/bin/backtranambig
/usr/bin/backtranseq
/usr/bin/banana
/usr/bin/biosed
/usr/bin/btwisted
/usr/bin/cachedas
/usr/bin/cachedbfetch
/usr/bin/cacheebeyesearch
/usr/bin/cacheensembl
/usr/bin/cai
/usr/bin/charge
/usr/bin/checktrans
/usr/bin/chips
/usr/bin/cirdna
/usr/bin/codcmp
/usr/bin/codcopy
/usr/bin/coderet
/usr/bin/compseq
/usr/bin/cons
/usr/bin/consambig
/usr/bin/cpgplot
/usr/bin/cpgreport
/usr/bin/cusp
/usr/bin/cutgextract
/usr/bin/cutseq
/usr/bin/dan
/usr/bin/dbiblast
/usr/bin/dbifasta
/usr/bin/dbiflat
/usr/bin/dbigcg
/usr/bin/dbtell
/usr/bin/dbxcompress
/usr/bin/dbxedam
/usr/bin/dbxfasta
/usr/bin/dbxflat
/usr/bin/dbxgcg
/usr/bin/dbxobo
/usr/bin/dbxreport
/usr/bin/dbxresource
/usr/bin/dbxstat
/usr/bin/dbxtax
/usr/bin/dbxuncompress
/usr/bin/degapseq
/usr/bin/density
/usr/bin/descseq
/usr/bin/diffseq
/usr/bin/distmat
/usr/bin/dotmatcher
/usr/bin/dotpath
/usr/bin/dottup
/usr/bin/dreg
/usr/bin/drfinddata
/usr/bin/drfindformat
/usr/bin/drfindid
/usr/bin/drfindresource
/usr/bin/drget
/usr/bin/drtext
/usr/bin/edamdef
/usr/bin/edamhasinput
/usr/bin/edamhasoutput
/usr/bin/edamisformat
/usr/bin/edamisid
/usr/bin/edamname
/usr/bin/edialign
/usr/bin/einverted
/usr/bin/em_chaos
/usr/bin/em_remap
/usr/bin/em_wordcount
/usr/bin/embossdata
/usr/bin/embossupdate
/usr/bin/embossversion
/usr/bin/emma
/usr/bin/emowse
/usr/bin/entret
/usr/bin/epestfind
/usr/bin/eprimer3
/usr/bin/eprimer32
/usr/bin/epscan
/usr/bin/equicktandem
/usr/bin/est2genome
/usr/bin/etandem
/usr/bin/extractalign
/usr/bin/extractfeat
/usr/bin/extractseq
/usr/bin/featcopy
/usr/bin/featmerge
/usr/bin/featreport
/usr/bin/feattext
/usr/bin/findkm
/usr/bin/freak
/usr/bin/fuzznuc
/usr/bin/fuzzpro
/usr/bin/fuzztran
/usr/bin/garnier
/usr/bin/geecee
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/usr/bin/godef
/usr/bin/goname
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/usr/bin/hmoment
/usr/bin/iep
/usr/bin/infoalign
/usr/bin/infoassembly
/usr/bin/infobase
/usr/bin/inforesidue
/usr/bin/infoseq
/usr/bin/isochore
/usr/bin/jaspextract
/usr/bin/jaspscan
/usr/bin/lindna
/usr/bin/listor
/usr/bin/makenucseq
/usr/bin/makeprotseq
/usr/bin/marscan
/usr/bin/maskambignuc
/usr/bin/maskambigprot
/usr/bin/maskfeat
/usr/bin/maskseq
/usr/bin/matcher
/usr/bin/megamerger
/usr/bin/merger
/usr/bin/msbar
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/usr/bin/needle
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/usr/bin/newcpgreport
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/usr/bin/nohtml
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/usr/bin/pepwindowall
/usr/bin/plotcon
/usr/bin/plotorf
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/usr/bin/seqxref
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/usr/bin/servertell
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/usr/share/EMBOSS/test/embl/division.lkp
/usr/share/EMBOSS/test/embl/entrynam.idx
/usr/share/EMBOSS/test/embl/est.dat
/usr/share/EMBOSS/test/embl/fun.dat
/usr/share/EMBOSS/test/embl/hum1.dat
/usr/share/EMBOSS/test/embl/inv.dat
/usr/share/EMBOSS/test/embl/keyword.hit
/usr/share/EMBOSS/test/embl/keyword.trg
/usr/share/EMBOSS/test/embl/pln.dat
/usr/share/EMBOSS/test/embl/pro.dat
/usr/share/EMBOSS/test/embl/rod.dat
/usr/share/EMBOSS/test/embl/seqvn.hit
/usr/share/EMBOSS/test/embl/seqvn.trg
/usr/share/EMBOSS/test/embl/sts.dat
/usr/share/EMBOSS/test/embl/syn.dat
/usr/share/EMBOSS/test/embl/taxon.hit
/usr/share/EMBOSS/test/embl/taxon.trg
/usr/share/EMBOSS/test/embl/vrl.dat
/usr/share/EMBOSS/test/embl/vrt.dat
/usr/share/EMBOSS/test/embl/wgs.dat
/usr/share/EMBOSS/test/genbank
/usr/share/EMBOSS/test/genbank/acnum.hit
/usr/share/EMBOSS/test/genbank/acnum.trg
/usr/share/EMBOSS/test/genbank/des.hit
/usr/share/EMBOSS/test/genbank/des.trg
/usr/share/EMBOSS/test/genbank/division.lkp
/usr/share/EMBOSS/test/genbank/entrynam.idx
/usr/share/EMBOSS/test/genbank/gbbct1.seq
/usr/share/EMBOSS/test/genbank/gbest1.seq
/usr/share/EMBOSS/test/genbank/gbinv1.seq
/usr/share/EMBOSS/test/genbank/gbpln1.seq
/usr/share/EMBOSS/test/genbank/gbpln2.seq
/usr/share/EMBOSS/test/genbank/gbpri1.seq
/usr/share/EMBOSS/test/genbank/gbrod1.seq
/usr/share/EMBOSS/test/genbank/gbsts1.seq
/usr/share/EMBOSS/test/genbank/gbvrl1.seq
/usr/share/EMBOSS/test/genbank/gbvrt.seq
/usr/share/EMBOSS/test/genbank/keyword.hit
/usr/share/EMBOSS/test/genbank/keyword.trg
/usr/share/EMBOSS/test/genbank/seqvn.hit
/usr/share/EMBOSS/test/genbank/seqvn.trg
/usr/share/EMBOSS/test/genbank/taxon.hit
/usr/share/EMBOSS/test/genbank/taxon.trg
/usr/share/EMBOSS/test/pir
/usr/share/EMBOSS/test/pir/acnum.hit
/usr/share/EMBOSS/test/pir/acnum.trg
/usr/share/EMBOSS/test/pir/des.hit
/usr/share/EMBOSS/test/pir/des.trg
/usr/share/EMBOSS/test/pir/division.lkp
/usr/share/EMBOSS/test/pir/entrynam.idx
/usr/share/EMBOSS/test/pir/keyword.hit
/usr/share/EMBOSS/test/pir/keyword.trg
/usr/share/EMBOSS/test/pir/pir1.header
/usr/share/EMBOSS/test/pir/pir1.names
/usr/share/EMBOSS/test/pir/pir1.numbers
/usr/share/EMBOSS/test/pir/pir1.offset
/usr/share/EMBOSS/test/pir/pir1.ref
/usr/share/EMBOSS/test/pir/pir1.seq
/usr/share/EMBOSS/test/pir/pir2.header
/usr/share/EMBOSS/test/pir/pir2.names
/usr/share/EMBOSS/test/pir/pir2.numbers
/usr/share/EMBOSS/test/pir/pir2.offset
/usr/share/EMBOSS/test/pir/pir2.ref
/usr/share/EMBOSS/test/pir/pir2.seq
/usr/share/EMBOSS/test/pir/pir3.header
/usr/share/EMBOSS/test/pir/pir3.names
/usr/share/EMBOSS/test/pir/pir3.numbers
/usr/share/EMBOSS/test/pir/pir3.offset
/usr/share/EMBOSS/test/pir/pir3.ref
/usr/share/EMBOSS/test/pir/pir3.seq
/usr/share/EMBOSS/test/pir/pir4.header
/usr/share/EMBOSS/test/pir/pir4.names
/usr/share/EMBOSS/test/pir/pir4.numbers
/usr/share/EMBOSS/test/pir/pir4.offset
/usr/share/EMBOSS/test/pir/pir4.ref
/usr/share/EMBOSS/test/pir/pir4.seq
/usr/share/EMBOSS/test/pir/taxon.hit
/usr/share/EMBOSS/test/pir/taxon.trg
/usr/share/EMBOSS/test/swiss
/usr/share/EMBOSS/test/swiss/acnum.hit
/usr/share/EMBOSS/test/swiss/acnum.trg
/usr/share/EMBOSS/test/swiss/des.hit
/usr/share/EMBOSS/test/swiss/des.trg
/usr/share/EMBOSS/test/swiss/division.lkp
/usr/share/EMBOSS/test/swiss/entrynam.idx
/usr/share/EMBOSS/test/swiss/keyword.hit
/usr/share/EMBOSS/test/swiss/keyword.trg
/usr/share/EMBOSS/test/swiss/seq.dat
/usr/share/EMBOSS/test/swiss/seqvn.hit
/usr/share/EMBOSS/test/swiss/seqvn.trg
/usr/share/EMBOSS/test/swiss/taxon.hit
/usr/share/EMBOSS/test/swiss/taxon.trg
/usr/share/EMBOSS/test/swnew
/usr/share/EMBOSS/test/swnew/acnum.hit
/usr/share/EMBOSS/test/swnew/acnum.trg
/usr/share/EMBOSS/test/swnew/des.hit
/usr/share/EMBOSS/test/swnew/des.trg
/usr/share/EMBOSS/test/swnew/division.lkp
/usr/share/EMBOSS/test/swnew/entrynam.idx
/usr/share/EMBOSS/test/swnew/keyword.hit
/usr/share/EMBOSS/test/swnew/keyword.trg
/usr/share/EMBOSS/test/swnew/seqvn.hit
/usr/share/EMBOSS/test/swnew/seqvn.trg
/usr/share/EMBOSS/test/swnew/taxon.hit
/usr/share/EMBOSS/test/swnew/taxon.trg
/usr/share/EMBOSS/test/swnew/trembl.dat
/usr/share/EMBOSS/test/testdb
/usr/share/EMBOSS/test/testdb/acnum.hit
/usr/share/EMBOSS/test/testdb/acnum.trg
/usr/share/EMBOSS/test/testdb/des.hit
/usr/share/EMBOSS/test/testdb/des.trg
/usr/share/EMBOSS/test/testdb/division.lkp
/usr/share/EMBOSS/test/testdb/entrynam.idx
/usr/share/EMBOSS/test/testdb/testdb.fasta
/usr/share/doc/EMBOSS
/usr/share/doc/EMBOSS/AUTHORS
/usr/share/doc/EMBOSS/ChangeLog
/usr/share/doc/EMBOSS/FAQ
/usr/share/doc/EMBOSS/INSTALL
/usr/share/doc/EMBOSS/NEWS
/usr/share/doc/EMBOSS/README
/usr/share/doc/EMBOSS/THANKS

References

Summary

In this tutorial we learn how to install EMBOSS on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).