How To Install bionetgen on Fedora 36

In this tutorial we learn how to install bionetgen in Fedora 36. bionetgen is Software for rule-based modeling of biochemical systems

Introduction

In this tutorial we learn how to install bionetgen on Fedora 36.

What is bionetgen

BioNetGen is software for the specification and simulation of rule-based models of biochemical systems, including signal transduction, metabolic, and genetic regulatory networks. The BioNetGen language has recently been extended to include explicit representation of compartments. A review of methods for rule-based modeling is available in Science Signaling (Sci. STKE, 18 July 2006, Issue 344, p. re6). BioNetGen is presently a mixture of Perl and C++. Network generation is currently implemented in Perl, the network simulator is C++, and a new language parser is being developed with ANTLR.

We can use yum or dnf to install bionetgen on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install bionetgen.

Install bionetgen on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install bionetgen using dnf by running the following command:

sudo dnf -y install bionetgen

Install bionetgen on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install bionetgen using yum by running the following command:

sudo yum -y install bionetgen

How To Uninstall bionetgen on Fedora 36

To uninstall only the bionetgen package we can use the following command:

sudo dnf remove bionetgen

bionetgen Package Contents on Fedora 36

/usr/bin/run_network
/usr/lib/.build-id
/usr/lib/.build-id/10
/usr/lib/.build-id/10/b958438c15df756a5abf50940a4c13ec911f97
/usr/share/doc/bionetgen
/usr/share/doc/bionetgen/CHANGES.txt
/usr/share/doc/bionetgen/CREDITS.txt
/usr/share/doc/bionetgen/README.md
/usr/share/doc/bionetgen/VERSION
/usr/share/licenses/bionetgen
/usr/share/licenses/bionetgen/LICENSE

References

Summary

In this tutorial we learn how to install bionetgen on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).