How To Install wise2 on Fedora 34
wise2 is Tools for comparison of bio-polymers
Introduction
In this tutorial we learn how to install wise2 on Fedora 34.
What is wise2
Wise2 is a package focused on comparisons of bio-polymers, commonly DNA sequence and protein sequence. A strength of Wise2 is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of gene structure with homology based alignment.
We can use yum or dnf to install wise2 on Fedora 34. In this tutorial we discuss both methods but you only need to choose one of method to install wise2.
Install wise2 on Fedora 34 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install wise2 using dnf by running the following command:
sudo dnf -y install wise2
Install wise2 on Fedora 34 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install wise2 using yum by running the following command:
sudo yum -y install wise2
How To Uninstall wise2 on Fedora 34
To uninstall only the wise2 package we can use the following command:
sudo dnf remove wise2
wise2 Package Contents on Fedora 34
/etc/profile.d/wise2.csh
/etc/profile.d/wise2.sh
/usr/bin/dba
/usr/bin/dnal
/usr/bin/estwise
/usr/bin/estwisedb
/usr/bin/genewise
/usr/bin/genewisedb
/usr/bin/promoterwise
/usr/bin/psw
/usr/bin/pswdb
/usr/bin/scanwise
/usr/bin/scanwise_server
/usr/lib/.build-id
/usr/lib/.build-id/02
/usr/lib/.build-id/02/db12a70857ab23297a319ca3e80b64027742d2
/usr/lib/.build-id/21
/usr/lib/.build-id/21/a16b2729d3621d9b07918df29f32311dc957a6
/usr/lib/.build-id/4e
/usr/lib/.build-id/4e/4d02638d86f724c717c0d5d37d97481cf5b75b
/usr/lib/.build-id/57
/usr/lib/.build-id/57/06aeedaa1cd36de25319eff132187569dc10c1
/usr/lib/.build-id/5d
/usr/lib/.build-id/5d/afa952eaca897222325a1bee18cc3b70d23648
/usr/lib/.build-id/64
/usr/lib/.build-id/64/a55c5e42808a992d0f95351450f4ccba91bcd6
/usr/lib/.build-id/85
/usr/lib/.build-id/85/b2e649ff63ee1673f63599986cd8b1b46b7917
/usr/lib/.build-id/ab
/usr/lib/.build-id/ab/df272703a5ad97fab4adcab410d2aeb71cde19
/usr/lib/.build-id/c1
/usr/lib/.build-id/c1/721ef09b24eb57f4b86f79d408deced4bd4715
/usr/lib/.build-id/d7
/usr/lib/.build-id/d7/865e4255359b596c8f2916d17be1fef6bececf
/usr/lib/.build-id/fb
/usr/lib/.build-id/fb/5cedcef3b8e88059a9db2ccdc17a9efe73196c
/usr/share/doc/wise2
/usr/share/doc/wise2/README
/usr/share/licenses/wise2
/usr/share/licenses/wise2/LICENSE
/usr/share/licenses/wise2/LICENSE.GPL
/usr/share/licenses/wise2/LICENSE.base
/usr/share/licenses/wise2/LICENSE.dyc
/usr/share/licenses/wise2/LICENSE.dynlibsrc
/usr/share/wise2
/usr/share/wise2/BLOSUM30.bla
/usr/share/wise2/BLOSUM45.bla
/usr/share/wise2/BLOSUM62.bla
/usr/share/wise2/BLOSUM80.bla
/usr/share/wise2/aa.rnd
/usr/share/wise2/cb.tmf
/usr/share/wise2/codon.martian
/usr/share/wise2/codon.table
/usr/share/wise2/examples
/usr/share/wise2/examples/HOX.HMM
/usr/share/wise2/examples/Q8NAN2.dna
/usr/share/wise2/examples/Q8NAN2.pep
/usr/share/wise2/examples/README
/usr/share/wise2/examples/alignwise.gen
/usr/share/wise2/examples/db.hmm
/usr/share/wise2/examples/dummy_hox.dna
/usr/share/wise2/examples/epo.genomic
/usr/share/wise2/examples/epo.pep
/usr/share/wise2/examples/fugu.gen
/usr/share/wise2/examples/fugu_human.pep
/usr/share/wise2/examples/hn_est.fa
/usr/share/wise2/examples/human.genomic
/usr/share/wise2/examples/jason.dna
/usr/share/wise2/examples/jason.pep
/usr/share/wise2/examples/keratin_intron.human
/usr/share/wise2/examples/keratin_intron.mouse
/usr/share/wise2/examples/pep.fa
/usr/share/wise2/examples/phased_roa1.pep
/usr/share/wise2/examples/road.pep
/usr/share/wise2/examples/rpo_fugu.gen
/usr/share/wise2/examples/rpo_h_f.anchor
/usr/share/wise2/examples/rpo_h_m.anchor
/usr/share/wise2/examples/rpo_h_r.anchor
/usr/share/wise2/examples/rpo_human.gen
/usr/share/wise2/examples/rpo_human.intron
/usr/share/wise2/examples/rpo_human.pep
/usr/share/wise2/examples/rpo_mouse.gen
/usr/share/wise2/examples/rpo_rat.gen
/usr/share/wise2/examples/rrm.HMM
/usr/share/wise2/examples/rua1.pep
/usr/share/wise2/examples/vav.dna
/usr/share/wise2/examples/vav_promoter.human
/usr/share/wise2/examples/vav_promoter.mouse
/usr/share/wise2/examples/xeno.cdna
/usr/share/wise2/examples/xeno.pep
/usr/share/wise2/gene.stat
/usr/share/wise2/gon120.bla
/usr/share/wise2/gon160.bla
/usr/share/wise2/gon200.bla
/usr/share/wise2/gon250.bla
/usr/share/wise2/gon350.bla
/usr/share/wise2/human.gf
/usr/share/wise2/human.gp
/usr/share/wise2/human.stats
/usr/share/wise2/idenity.bla
/usr/share/wise2/methods
/usr/share/wise2/pb.gf
/usr/share/wise2/pombe.gf
/usr/share/wise2/tm.pri
/usr/share/wise2/wag55
/usr/share/wise2/wag65
/usr/share/wise2/wag75
/usr/share/wise2/wag85
/usr/share/wise2/wise.2
/usr/share/wise2/wise.per
/usr/share/wise2/worm.gf
References
Summary
In this tutorial we learn how to install wise2 on Fedora 34 using yum and dnf.