How To Install SIBsim4 on Fedora 34

SIBsim4 is Align expressed RNA sequences on a DNA template

Introduction

In this tutorial we learn how to install SIBsim4 on Fedora 34.

What is SIBsim4

SIBsim4 is a modified version of the sim4 program, which is a similarity-based tool for aligning an expressed DNA sequence (EST, mRNA) with a genomic sequence.

We can use yum or dnf to install SIBsim4 on Fedora 34. In this tutorial we discuss both methods but you only need to choose one of method to install SIBsim4.

Install SIBsim4 on Fedora 34 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

The output should look something like this:

Fedora 34 - x86_64                               20 kB/s | 6.6 kB     00:00
Fedora 34 openh264 (From Cisco) - x86_64        1.4 kB/s | 989  B     00:00
Fedora Modular 34 - x86_64                       68 kB/s | 6.5 kB     00:00
Fedora 34 - x86_64 - Updates                    3.5 kB/s | 6.2 kB     00:01
Fedora Modular 34 - x86_64 - Updates             17 kB/s | 5.9 kB     00:00
Metadata cache created.

After updating yum database, We can install SIBsim4 using dnf by running the following command:

sudo dnf -y install SIBsim4

Install SIBsim4 on Fedora 34 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

The output should look something like this:

Fedora 34 - x86_64                               20 kB/s | 6.6 kB     00:00
Fedora 34 openh264 (From Cisco) - x86_64        1.4 kB/s | 989  B     00:00
Fedora Modular 34 - x86_64                       68 kB/s | 6.5 kB     00:00
Fedora 34 - x86_64 - Updates                    3.5 kB/s | 6.2 kB     00:01
Fedora Modular 34 - x86_64 - Updates             17 kB/s | 5.9 kB     00:00
Metadata cache created.

After updating yum database, We can install SIBsim4 using yum by running the following command:

sudo yum -y install SIBsim4

How To Uninstall SIBsim4 on Fedora 34

To uninstall only the SIBsim4 package we can use the following command:

sudo dnf remove SIBsim4

SIBsim4 Package Contents on Fedora 34

/usr/bin/SIBsim4
/usr/lib/.build-id
/usr/lib/.build-id/e1
/usr/lib/.build-id/e1/75c02b7f2886a720d40a4d8a02dc25c8cf60c9
/usr/share/doc/SIBsim4
/usr/share/doc/SIBsim4/COPYRIGHT
/usr/share/man/man1/SIBsim4.1.gz

References

Summary

In this tutorial we learn how to install SIBsim4 on Fedora 34 using yum and dnf.