How To Install seqan on Fedora 34
seqan is Open source C++ library of efficient algorithms and data structures
Introduction
In this tutorial we learn how to install seqan on Fedora 34.
What is seqan
SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries.
We can use yum or dnf to install seqan on Fedora 34. In this tutorial we discuss both methods but you only need to choose one of method to install seqan.
Install seqan on Fedora 34 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install seqan using dnf by running the following command:
sudo dnf -y install seqan
Install seqan on Fedora 34 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install seqan using yum by running the following command:
sudo yum -y install seqan
How To Uninstall seqan on Fedora 34
To uninstall only the seqan package we can use the following command:
sudo dnf remove seqan
seqan Package Contents on Fedora 34
/usr/bin/alf
/usr/bin/bam2roi
/usr/bin/bed_sort.sh
/usr/bin/bisar
/usr/bin/breakpoint_calculator
/usr/bin/casbar
/usr/bin/compute_gain
/usr/bin/dfi
/usr/bin/fiona
/usr/bin/four2three
/usr/bin/fx_bam_coverage
/usr/bin/gff_sort.sh
/usr/bin/gustaf
/usr/bin/insegt
/usr/bin/mason
/usr/bin/mason_frag_sequencing
/usr/bin/mason_genome
/usr/bin/mason_materializer
/usr/bin/mason_simulator
/usr/bin/mason_variator
/usr/bin/micro_razers
/usr/bin/pair_align
/usr/bin/param_chooser
/usr/bin/plot.awk
/usr/bin/ps2pswLinks.gawk
/usr/bin/rabema_build_gold_standard
/usr/bin/rabema_evaluate
/usr/bin/rabema_prepare_sam
/usr/bin/razers
/usr/bin/razers2
/usr/bin/razers3
/usr/bin/rep_sep
/usr/bin/roi_feature_projection
/usr/bin/roi_plot_9.sh
/usr/bin/roi_plot_thumbnails
/usr/bin/roi_sort.sh
/usr/bin/sak
/usr/bin/sam2matrix
/usr/bin/samcat
/usr/bin/searchjoin
/usr/bin/seqan_flexbar
/usr/bin/seqan_tcoffee
/usr/bin/seqcons
/usr/bin/sgip
/usr/bin/snp_store
/usr/bin/splazers
/usr/bin/stellar
/usr/bin/tree_recon
/usr/bin/variant_comp
/usr/lib/.build-id
/usr/lib/.build-id/01
/usr/lib/.build-id/01/5ab12d8443dcf694d0e94747950e7326a5f58e
/usr/lib/.build-id/0c
/usr/lib/.build-id/0c/84907358e8615f5a3bb61f8733bc2b27444b7b
/usr/lib/.build-id/19
/usr/lib/.build-id/19/6d71faa4b785830c35ebebe3e25eb579252e2a
/usr/lib/.build-id/1e
/usr/lib/.build-id/1e/b33a083020c1e4d6bc7a1e4788acae114a8799
/usr/lib/.build-id/30
/usr/lib/.build-id/30/316f882cc9f47d8c2f0fbfcab01c47b9372e53
/usr/lib/.build-id/32
/usr/lib/.build-id/32/826f144a6a64751138c0e010a30db40a9b3c3f
/usr/lib/.build-id/35
/usr/lib/.build-id/35/c0ee1cc3d98093d75a3abf0179173ec8ce27f0
/usr/lib/.build-id/44
/usr/lib/.build-id/44/82eaeecdeec9c8ff7b1f6d46bbfc634886defa
/usr/lib/.build-id/50
/usr/lib/.build-id/50/1ab8e98dcecfbb215ccd7777aa8addf2084e45
/usr/lib/.build-id/5a
/usr/lib/.build-id/5a/d2ddd7f1cead510973286bb1c32d701113d6d1
/usr/lib/.build-id/5c
/usr/lib/.build-id/5c/257b28afb579b8eb5abb6f907a84c28cc628dc
/usr/lib/.build-id/64
/usr/lib/.build-id/64/f03d474781752730ed4a0dbee2c19173c37b3a
/usr/lib/.build-id/6c
/usr/lib/.build-id/6c/241f8b9e4f1d386e25899215ae92a68a6599ad
/usr/lib/.build-id/71
/usr/lib/.build-id/71/ff8b75800ef7bd3cd96875f9256e06372d5c26
/usr/lib/.build-id/7f
/usr/lib/.build-id/7f/aa24080a821c7c360b179be4ae9ad7d745e61e
/usr/lib/.build-id/82
/usr/lib/.build-id/82/1b895bddf5589a1e1bad2c48512cb595e7c21a
/usr/lib/.build-id/82/dbf19bdddecb08471e23e4bc87748479a04fa4
/usr/lib/.build-id/84
/usr/lib/.build-id/84/eb4d41d14449d730ed9caff8fcd85f6ec2d7b5
/usr/lib/.build-id/86
/usr/lib/.build-id/86/6a211a2a1d1762ed8c1021ea1f7e58f9dc57a8
/usr/lib/.build-id/8d
/usr/lib/.build-id/8d/9b06db6d1104aafb70e3856c631ea214caa4a2
/usr/lib/.build-id/93
/usr/lib/.build-id/93/a8165ab1aa2b3bebf97bc81ef145e20493aedf
/usr/lib/.build-id/94
/usr/lib/.build-id/94/55ae0caff5860837226a244bea4fa6c39c80f2
/usr/lib/.build-id/96
/usr/lib/.build-id/96/1702014e3d51a34ba96c4e326663f00f9450bc
/usr/lib/.build-id/a1
/usr/lib/.build-id/a1/366adb70c5a3e3b6fb94c0c95d8fb8c2f0c153
/usr/lib/.build-id/a5
/usr/lib/.build-id/a5/c4de844fb8928ce3ffd391e97d00db432da397
/usr/lib/.build-id/a7
/usr/lib/.build-id/a7/fc9f30f270ca9d326c9a81e1c771e573844751
/usr/lib/.build-id/aa
/usr/lib/.build-id/aa/637b07fd49c26c59158ffbdd2723dad880b0ed
/usr/lib/.build-id/b8
/usr/lib/.build-id/b8/d5980102b4cd9fbbd6a8289c984a666886aa98
/usr/lib/.build-id/c0
/usr/lib/.build-id/c0/1b052b288499ad3c48ddd9109f2e43cb685289
/usr/lib/.build-id/c2
/usr/lib/.build-id/c2/2a38bd866896cdfb4420ec130a4b08f8ac6069
/usr/lib/.build-id/c8
/usr/lib/.build-id/c8/b5d3e0b5363ce702007cdc00ef3aefc879c19e
/usr/lib/.build-id/c9
/usr/lib/.build-id/c9/1e7fc0ec6255d00e1f2a4064c15fa03c3783d6
/usr/lib/.build-id/d4
/usr/lib/.build-id/d4/f0fe020e8def451a41f491eebcfdc56edbe277
/usr/lib/.build-id/d6
/usr/lib/.build-id/d6/cf42a1e4d6443461039ebe4ce691d60a41d599
/usr/lib/.build-id/de
/usr/lib/.build-id/de/54bf964dac89c77351757c79f55a731f65eaa9
/usr/lib/.build-id/de/9d7312259d8295d7c190270c02d8782d10b811
/usr/lib/.build-id/f0
/usr/lib/.build-id/f0/bdc80a715885e15ff68bfddfcaaeceb13c77b6
/usr/lib/.build-id/f6
/usr/lib/.build-id/f6/32baed2079fcbb3bd7e64d78d597fde2579ec1
/usr/lib/.build-id/f8
/usr/lib/.build-id/f8/94ec952f1fd2bf7bdded10e88f2a7999072f5f
/usr/lib/.build-id/f9
/usr/lib/.build-id/f9/d02749940a257654d3bdf6d57ce9fa835b4280
/usr/lib/.build-id/fb
/usr/lib/.build-id/fb/ea50a6b24814ef05c100a3663ddd6405064884
/usr/lib/.build-id/fe
/usr/lib/.build-id/fe/43ecc44f7d372b3c7ef63819dc01b65c692c7f
/usr/lib/.build-id/ff
/usr/lib/.build-id/ff/a908bcd5b32405d650a60781542845758848e1
/usr/share/doc/seqan
/usr/share/doc/seqan/README.rst
/usr/share/licenses/seqan
/usr/share/licenses/seqan/BSD.txt
/usr/share/licenses/seqan/GPLv3+.txt
/usr/share/licenses/seqan/LGPLv3+.txt
References
Summary
In this tutorial we learn how to install seqan on Fedora 34 using yum and dnf.