How To Install pymol on Fedora 34
pymol is PyMOL Molecular Graphics System
Introduction
In this tutorial we learn how to install pymol on Fedora 34.
What is pymol
PyMOL is a molecular graphics system with an embedded Python interpreter designed for real-time visualization and rapid generation of high-quality molecular graphics images and animations. It is fully extensible and available free to everyone via the “Python” license. Although a newcomer to the field, PyMOL can already be used to generate stunning images and animations with ease. It can also perform many other valuable tasks (such as editing PDB files) to assist you in your research.
We can use yum or dnf to install pymol on Fedora 34. In this tutorial we discuss both methods but you only need to choose one of method to install pymol.
Install pymol on Fedora 34 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install pymol using dnf by running the following command:
sudo dnf -y install pymol
Install pymol on Fedora 34 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install pymol using yum by running the following command:
sudo yum -y install pymol
How To Uninstall pymol on Fedora 34
To uninstall only the pymol package we can use the following command:
sudo dnf remove pymol
pymol Package Contents on Fedora 34
/usr/bin/pymol
/usr/lib/.build-id
/usr/lib/.build-id/ba
/usr/lib/.build-id/ba/5049ef460f882cd46b861141d60fb2bcba56e0
/usr/lib/.build-id/f6
/usr/lib/.build-id/f6/984e27f9f9352de09fcea2188b89413cf57035
/usr/lib64/python3.9/site-packages/chempy
/usr/lib64/python3.9/site-packages/chempy/__init__.py
/usr/lib64/python3.9/site-packages/chempy/__pycache__
/usr/lib64/python3.9/site-packages/chempy/__pycache__/__init__.cpython-39.opt-1.pyc
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/usr/lib64/python3.9/site-packages/chempy/__pycache__/arc.cpython-39.pyc
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/usr/share/doc/pymol/DEVELOPERS
/usr/share/doc/pymol/README.md
/usr/share/licenses/pymol
/usr/share/licenses/pymol/LICENSE
/usr/share/metainfo/pymol.appdata.xml
/usr/share/pixmaps/pymol.png
References
Summary
In this tutorial we learn how to install pymol on Fedora 34 using yum and dnf.