How To Install imagej on Fedora 34

imagej is Image Processing and Analysis in Java

Introduction

In this tutorial we learn how to install imagej on Fedora 34.

What is `imagej`

ImageJ is a public domain Java image processing program. It can display, edit, analyze a wide variety of image data, including image sequences. Imagej can be used for quantitative analysis of engineering and scientific image data.

We can use yum or dnf to install imagej on Fedora 34. In this tutorial we discuss both methods but you only need to choose one of method to install imagej.

Install imagej on Fedora 34 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

The output should look something like this:

Fedora 34 - x86_64                               20 kB/s | 6.6 kB     00:00
Fedora 34 openh264 (From Cisco) - x86_64        1.4 kB/s | 989  B     00:00
Fedora Modular 34 - x86_64                       68 kB/s | 6.5 kB     00:00
Fedora 34 - x86_64 - Updates                    3.5 kB/s | 6.2 kB     00:01
Fedora Modular 34 - x86_64 - Updates             17 kB/s | 5.9 kB     00:00
Metadata cache created.

After updating yum database, We can install imagej using dnf by running the following command:

sudo dnf -y install imagej

Install imagej on Fedora 34 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

The output should look something like this:

Fedora 34 - x86_64                               20 kB/s | 6.6 kB     00:00
Fedora 34 openh264 (From Cisco) - x86_64        1.4 kB/s | 989  B     00:00
Fedora Modular 34 - x86_64                       68 kB/s | 6.5 kB     00:00
Fedora 34 - x86_64 - Updates                    3.5 kB/s | 6.2 kB     00:01
Fedora Modular 34 - x86_64 - Updates             17 kB/s | 5.9 kB     00:00
Metadata cache created.

After updating yum database, We can install imagej using yum by running the following command:

sudo yum -y install imagej

How To Uninstall imagej on Fedora 34

To uninstall only the imagej package we can use the following command:

sudo dnf remove imagej

imagej Package Contents on Fedora 34

/usr/bin/imagej
/usr/share/applications/imagej.desktop
/usr/share/doc/imagej
/usr/share/doc/imagej/aREADME.txt
/usr/share/doc/imagej/applet.html
/usr/share/doc/imagej/release-notes.html
/usr/share/imagej
/usr/share/imagej/IJ_Props.txt
/usr/share/imagej/about.jpg
/usr/share/imagej/luts
/usr/share/imagej/macros
/usr/share/imagej/macros/3Dflight.txt
/usr/share/imagej/macros/AA_ReadMe.txt
/usr/share/imagej/macros/About Startup Macros
/usr/share/imagej/macros/ApplyDicomRescaleSlope.txt
/usr/share/imagej/macros/ApplyFunctionToImage.txt
/usr/share/imagej/macros/ArgumentPassingDemo.txt
/usr/share/imagej/macros/Arrays.txt
/usr/share/imagej/macros/Artillery.txt
/usr/share/imagej/macros/AzimuthalProfile.txt
/usr/share/imagej/macros/BackgroundCorrectedDensity.txt
/usr/share/imagej/macros/BatchConvert.txt
/usr/share/imagej/macros/BatchConvertToBinary.txt
/usr/share/imagej/macros/BatchConvertToJPEG.txt
/usr/share/imagej/macros/BatchMeasure.txt
/usr/share/imagej/macros/BatchModeCalculator.txt
/usr/share/imagej/macros/BatchModeCompositeSelection.txt
/usr/share/imagej/macros/BatchModeTest.txt
/usr/share/imagej/macros/BatchProcessFolders.txt
/usr/share/imagej/macros/BatchRGBMeasure.txt
/usr/share/imagej/macros/BatchSetScale.txt
/usr/share/imagej/macros/Batch_RGB_Merge.txt
/usr/share/imagej/macros/BouncingBar.txt
/usr/share/imagej/macros/BuiltinFunctions.txt
/usr/share/imagej/macros/BullsEye.txt
/usr/share/imagej/macros/CalculateMean.txt
/usr/share/imagej/macros/Calculate_Black_to_White_Ratio.txt
/usr/share/imagej/macros/Calculations.txt
/usr/share/imagej/macros/ChangeColors.txt
/usr/share/imagej/macros/CircularParticles.txt
/usr/share/imagej/macros/CloseAllWindows.txt
/usr/share/imagej/macros/CommandLine.txt
/usr/share/imagej/macros/CompositeSelections.txt
/usr/share/imagej/macros/ConvertDicomDictionary.txt
/usr/share/imagej/macros/ConvertMaskToCompositeROI.txt
/usr/share/imagej/macros/ConvertStackToBinary.txt
/usr/share/imagej/macros/ConvexHull.txt
/usr/share/imagej/macros/ConvexitySolidarity.txt
/usr/share/imagej/macros/CreateImageFromFunction.txt
/usr/share/imagej/macros/CustomHistogram.txt
/usr/share/imagej/macros/Custom_Profile_Plot.txt
/usr/share/imagej/macros/DXM_jpg_acquisition_Mode.txt
/usr/share/imagej/macros/DeconvolutionDemo.txt
/usr/share/imagej/macros/DialogDemo.txt
/usr/share/imagej/macros/DisplayRangeMacros.txt
/usr/share/imagej/macros/DisplayTiffInfo.txt
/usr/share/imagej/macros/Display_Pixel_Values.txt
/usr/share/imagej/macros/DoWandDemo.txt
/usr/share/imagej/macros/DottedLines.txt
/usr/share/imagej/macros/DrawGradientLine.txt
/usr/share/imagej/macros/DrawRandomDots.txt
/usr/share/imagej/macros/DrawSliceLabels.txt
/usr/share/imagej/macros/EDM_16bits.txt
/usr/share/imagej/macros/EXIF_Batch_Reader.txt
/usr/share/imagej/macros/EllipseCalibration.txt
/usr/share/imagej/macros/ErodeToSinglePixel.txt
/usr/share/imagej/macros/EvalDemo.txt
/usr/share/imagej/macros/ExamplePlots.txt
/usr/share/imagej/macros/ExifDateAndTime.txt
/usr/share/imagej/macros/ExpandOrShrinkSelection.txt
/usr/share/imagej/macros/ExtractRGBChannels.txt
/usr/share/imagej/macros/FFTCustomFilterDemo.txt
/usr/share/imagej/macros/FFTRemoveStreaks.txt
/usr/share/imagej/macros/Factorials.txt
/usr/share/imagej/macros/FeretsDiameter.txt
/usr/share/imagej/macros/FileDemo.txt
/usr/share/imagej/macros/FileSequences.txt
/usr/share/imagej/macros/Find.txt
/usr/share/imagej/macros/FindMaxPixelLocation.txt
/usr/share/imagej/macros/FindSelectionLimits.txt
/usr/share/imagej/macros/FindSelectionPeak.txt
/usr/share/imagej/macros/FindTopPixel.txt
/usr/share/imagej/macros/FixLineEndings.txt
/usr/share/imagej/macros/FixNIHImageTiffs.txt
/usr/share/imagej/macros/Fixed16BitTo8BitConversion.txt
/usr/share/imagej/macros/FractalEDM.txt
/usr/share/imagej/macros/FullRange16BitInvert.txt
/usr/share/imagej/macros/FullTelomerecounter.txt
/usr/share/imagej/macros/Gamma.txt
/usr/share/imagej/macros/GaussianConvolution.txt
/usr/share/imagej/macros/GenerateColorMap.txt
/usr/share/imagej/macros/GetCursorLocDemo.txt
/usr/share/imagej/macros/GetDateAndTime.txt
/usr/share/imagej/macros/GetDirectoryDemo.txt
/usr/share/imagej/macros/GetProfileExample.txt
/usr/share/imagej/macros/HSB_Histogram.txt
/usr/share/imagej/macros/HalfCircleSelections.txt
/usr/share/imagej/macros/HistogramLister.txt
/usr/share/imagej/macros/HistogramOfResultsValues.txt
/usr/share/imagej/macros/HistogramPlotter.txt
/usr/share/imagej/macros/HtmlDialogDemo.txt
/usr/share/imagej/macros/ImageCalculatorDemo.txt
/usr/share/imagej/macros/ImageCreationTest.txt
/usr/share/imagej/macros/ImageRotator.txt
/usr/share/imagej/macros/Import_Results_Table.txt
/usr/share/imagej/macros/Init.txt
/usr/share/imagej/macros/InvertImage.txt
/usr/share/imagej/macros/KeyboardShortcuts.txt
/usr/share/imagej/macros/LSM_Batch_With_Colors.txt
/usr/share/imagej/macros/LabelParticlesWithArea.txt
/usr/share/imagej/macros/LineAngleTool.txt
/usr/share/imagej/macros/LineStatistics.txt
/usr/share/imagej/macros/ListDicomTags.txt
/usr/share/imagej/macros/ListFilesRecursively.txt
/usr/share/imagej/macros/ListSelectionCoordinates.txt
/usr/share/imagej/macros/LookupTables.txt
/usr/share/imagej/macros/LoopStack.txt
/usr/share/imagej/macros/MacroSet.txt
/usr/share/imagej/macros/MakeMontage.txt
/usr/share/imagej/macros/MakeSelectionDemo.txt
/usr/share/imagej/macros/Mandelbrot.txt
/usr/share/imagej/macros/MaskToSelectionMacros.txt
/usr/share/imagej/macros/Max_Value_Segmentation.txt
/usr/share/imagej/macros/Measure3Lengths.txt
/usr/share/imagej/macros/MeasureAndLabelXYZ.txt
/usr/share/imagej/macros/MeasureAndSetLabel.txt
/usr/share/imagej/macros/MeasureAreaFraction.txt
/usr/share/imagej/macros/MeasureEdgePixels.txt
/usr/share/imagej/macros/MeasureOutside.txt
/usr/share/imagej/macros/MeasurePointSpacing.txt
/usr/share/imagej/macros/MeasureRGB.txt
/usr/share/imagej/macros/MeasureRedirected.txt
/usr/share/imagej/macros/MeasureStack.txt
/usr/share/imagej/macros/Measure_And_Label.txt
/usr/share/imagej/macros/Measure_Angle_And_Length.txt
/usr/share/imagej/macros/MotionBlurRemoval.txt
/usr/share/imagej/macros/MoveSelection.txt
/usr/share/imagej/macros/MultipleColourAnalysis.txt
/usr/share/imagej/macros/MultipleColourBackgrounds.txt
/usr/share/imagej/macros/OpenFileDemo.txt
/usr/share/imagej/macros/OpenImagesFromList.txt
/usr/share/imagej/macros/OpenMacIPLab.txt
/usr/share/imagej/macros/OpenSeriesUsingFilter.txt
/usr/share/imagej/macros/ParseFloatIntExamples.txt
/usr/share/imagej/macros/ParticleCircularityHistogram.txt
/usr/share/imagej/macros/ParticleClusterAnalysis.txt
/usr/share/imagej/macros/ParticleLabelingExample.txt
/usr/share/imagej/macros/ParticleOutlines.txt
/usr/share/imagej/macros/ParticleRotator.txt
/usr/share/imagej/macros/PasteControlDemo.txt
/usr/share/imagej/macros/PlotColumnPixelCounts.txt
/usr/share/imagej/macros/PlotProfileWithSD.txt
/usr/share/imagej/macros/PlotStack.txt
/usr/share/imagej/macros/PointsToStack.txt
/usr/share/imagej/macros/Polygon.txt
/usr/share/imagej/macros/PolygonArea.txt
/usr/share/imagej/macros/Pong.txt
/usr/share/imagej/macros/RGB_Histogram.txt
/usr/share/imagej/macros/ROI_Manager_Stack_Demo.txt
/usr/share/imagej/macros/RadialIntegratedIntensity.txt
/usr/share/imagej/macros/RandomOvals.txt
/usr/share/imagej/macros/RandomSampleAndMeasure.txt
/usr/share/imagej/macros/RatioOfDifferenceAndSum.txt
/usr/share/imagej/macros/RecordProfile.txt
/usr/share/imagej/macros/RedirectedParticleAnalysis.txt
/usr/share/imagej/macros/RegressionTests.txt
/usr/share/imagej/macros/ReplaceRedWithMagenta.txt
/usr/share/imagej/macros/ResizeImagesAndStack.txt
/usr/share/imagej/macros/ResultsSummary.txt
/usr/share/imagej/macros/ReturnStatements.txt
/usr/share/imagej/macros/RoiManagerAddParticles.txt
/usr/share/imagej/macros/RoiManagerMacros.txt
/usr/share/imagej/macros/RoiManagerSpeedTest.txt
/usr/share/imagej/macros/RotateSelection.txt
/usr/share/imagej/macros/Rotate_Image.txt
/usr/share/imagej/macros/RotatingPolygon.txt
/usr/share/imagej/macros/ScaleSelection.txt
/usr/share/imagej/macros/Search_Macros.txt
/usr/share/imagej/macros/SelectionCoordinates.txt
/usr/share/imagej/macros/Shift_RGB_Channel.txt
/usr/share/imagej/macros/Shortcuts.txt
/usr/share/imagej/macros/ShowImageInfo.txt
/usr/share/imagej/macros/ShowPath.txt
/usr/share/imagej/macros/ShowRawStatistics.txt
/usr/share/imagej/macros/ShowScale.txt
/usr/share/imagej/macros/ShowStatistics.txt
/usr/share/imagej/macros/Show_Selection_As_Text.txt
/usr/share/imagej/macros/SineCosineTable.txt
/usr/share/imagej/macros/Slice-to-Slice Difference.txt
/usr/share/imagej/macros/SortDemo.txt
/usr/share/imagej/macros/StackHistogramLister.txt
/usr/share/imagej/macros/StackProfilePlot.txt
/usr/share/imagej/macros/Stacks.txt
/usr/share/imagej/macros/StartupMacros.txt
/usr/share/imagej/macros/Statements.txt
/usr/share/imagej/macros/StringFunctions.txt
/usr/share/imagej/macros/SubractMeasuredBackground.txt
/usr/share/imagej/macros/SubtractProfile.txt
/usr/share/imagej/macros/SumAreas.txt
/usr/share/imagej/macros/Test_Wavelets.txt
/usr/share/imagej/macros/TextDemo.txt
/usr/share/imagej/macros/TiffCommentsEditor.txt
/usr/share/imagej/macros/TimeLapseCapture.txt
/usr/share/imagej/macros/TimingTest.txt
/usr/share/imagej/macros/ToolShortcuts.txt
/usr/share/imagej/macros/Translate.txt
/usr/share/imagej/macros/Unicode.txt
/usr/share/imagej/macros/UserFunctions.txt
/usr/share/imagej/macros/VolumeFractionOfBone.txt
/usr/share/imagej/macros/data
/usr/share/imagej/macros/data/PlotStackData.txt
/usr/share/imagej/macros/getRGBPixelCount.txt
/usr/share/imagej/macros/telecran.txt
/usr/share/imagej/macros/tools
/usr/share/imagej/macros/tools/3D-Distance-Tool.txt
/usr/share/imagej/macros/tools/3FluoLablelingExploringTools.txt
/usr/share/imagej/macros/tools/AboutTool.txt
/usr/share/imagej/macros/tools/ArrowMakerTool.txt
/usr/share/imagej/macros/tools/ArrowTool.txt
/usr/share/imagej/macros/tools/BigCursorTool.txt
/usr/share/imagej/macros/tools/ButtonBar.txt
/usr/share/imagej/macros/tools/ChangeColorTool.txt
/usr/share/imagej/macros/tools/CircleTool.txt
/usr/share/imagej/macros/tools/CircularQuadrantMeasureTool.txt
/usr/share/imagej/macros/tools/CircularSelectionTool.txt
/usr/share/imagej/macros/tools/ClickToTrackTool.txt
/usr/share/imagej/macros/tools/ColorPickerTool.txt
/usr/share/imagej/macros/tools/ConcentricRingsTool.txt
/usr/share/imagej/macros/tools/DrawingTools.txt
/usr/share/imagej/macros/tools/ExampleTool.txt
/usr/share/imagej/macros/tools/FloodFillTool.txt
/usr/share/imagej/macros/tools/GetCursorLocDemoTool.txt
/usr/share/imagej/macros/tools/LabelLineTool.txt
/usr/share/imagej/macros/tools/LineAngleTool.txt
/usr/share/imagej/macros/tools/LineTool.txt
/usr/share/imagej/macros/tools/MagnifyingGlassTool.txt
/usr/share/imagej/macros/tools/MeasurePieSegmentsTool.txt
/usr/share/imagej/macros/tools/MeasurerAndLabelTool.txt
/usr/share/imagej/macros/tools/MirrorSelectionTool.txt
/usr/share/imagej/macros/tools/MultiCursorTool.txt
/usr/share/imagej/macros/tools/PaintbrushTool.txt
/usr/share/imagej/macros/tools/PencilTool.txt
/usr/share/imagej/macros/tools/PixelPickerTool.txt
/usr/share/imagej/macros/tools/SpotMeasurementTool.txt
/usr/share/imagej/macros/tools/SprayCanTool.txt
/usr/share/imagej/macros/tools/Tools.txt
/usr/share/imagej/macros/tools/WandAutoMeasureTool.txt
/usr/share/imagej/macros/tools/ZProfileTool.txt
/usr/share/imagej/plugins
/usr/share/java/imagej.jar
/usr/share/pixmaps/imagej.png

References

imagej website

Summary

In this tutorial we learn how to install imagej on Fedora 34 using yum and dnf.