How To Install minexpert2 on Debian 11
Introduction
In this tutorial we learn how to install minexpert2 on Debian 11.
What is minexpert2
minexpert2 is:
mineXpert2 allows the user to perform the following tasks:
- Open mass spectrometry data files (mzML, mzXML, asc, xy, …);
- Display in a table view the full data set, for easy filtering;
- Calculate and display the TIC chromatogram;
- Calculate and display a mz=f(rt) color map;
- For mobility data, calculate and display a mz=f(dt) color map;
- Integrate the mass spectrometric data from any kind of data representation (mass | drift spectra, TIC | XIC chromatogram, 2D color maps) to any other kind of data representation;
- For any mass data feature (mass peak, TIC | XIC peak, color map) integrate to a XIC single intensity value;
- Powerful isotopic cluster calculation starting from a chemical formula, optionally with user-defined isotopic abundance ratios;
- Gaussian fit over any isotopic cluster to estimate the average mass of a given ion;
- Mouse-driven deconvolution of m/z data (charge envelope-based or isotopic cluster-based);
- Export the data to text files;
- Export the graphical representation of mass spectrometric data to graphics files in a number of formats (jpg, png, pdf).
This package ships the mineXpert2 program.
There are three methods to install minexpert2 on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install minexpert2 Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install minexpert2 using apt-get by running the following command:
sudo apt-get -y install minexpert2
Install minexpert2 Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install minexpert2 using apt by running the following command:
sudo apt -y install minexpert2
Install minexpert2 Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install minexpert2 using aptitude by running the following command:
sudo aptitude -y install minexpert2
How To Uninstall minexpert2 on Debian 11
To uninstall only the minexpert2 package we can use the following command:
sudo apt-get remove minexpert2
Uninstall minexpert2 And Its Dependencies
To uninstall minexpert2 and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove minexpert2
Remove minexpert2 Configurations and Data
To remove minexpert2 configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge minexpert2
Remove minexpert2 configuration, data, and all of its dependencies
We can use the following command to remove minexpert2 configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge minexpert2
Dependencies
minexpert2 have the following dependencies:
- libc6
- libgcc-s1
- libgomp1
- libisospec++2
- libpappsomspp-widget0
- libpappsomspp0
- libqcustomplot2.0
- libqt5core5a
- libqt5gui5
- libqt5svg5
- libqt5widgets5
- libqt5xml5
- libstdc++6
References
Summary
In this tutorial we learn how to install minexpert2 package on Debian 11 using different package management tools: apt, apt-get and aptitude.
