How To Install giira on Debian 10
Introduction
In this tutorial we learn how to install giira on Debian 10.
What is giira
giira is:
GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.
There are three methods to install giira on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install giira Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install giira using apt-get by running the following command:
sudo apt-get -y install giira
Install giira Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install giira using apt by running the following command:
sudo apt -y install giira
Install giira Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install giira using aptitude by running the following command:
sudo aptitude -y install giira
How To Uninstall giira on Debian 10
To uninstall only the giira package we can use the following command:
sudo apt-get remove giira
Uninstall giira And Its Dependencies
To uninstall giira and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove giira
Remove giira Configurations and Data
To remove giira configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge giira
Remove giira configuration, data, and all of its dependencies
We can use the following command to remove giira configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge giira
Dependencies
giira have the following dependencies:
References
Summary
In this tutorial we learn how to install giira package on Debian 10 using different package management tools: apt, apt-get and aptitude.
