How To Install spaln-data on Debian 12
Introduction
In this tutorial we learn how to install spaln-data on Debian 12.
What is spaln-data
spaln-data is:
Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.
spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.
This package contains the architecture independent data files.
There are three methods to install spaln-data on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install spaln-data Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install spaln-data using apt-get by running the following command:
sudo apt-get -y install spaln-data
Install spaln-data Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install spaln-data using apt by running the following command:
sudo apt -y install spaln-data
Install spaln-data Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install spaln-data using aptitude by running the following command:
sudo aptitude -y install spaln-data
How To Uninstall spaln-data on Debian 12
To uninstall only the spaln-data package we can use the following command:
sudo apt-get remove spaln-data
Uninstall spaln-data And Its Dependencies
To uninstall spaln-data and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove spaln-data
Remove spaln-data Configurations and Data
To remove spaln-data configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge spaln-data
Remove spaln-data configuration, data, and all of its dependencies
We can use the following command to remove spaln-data configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge spaln-data
Dependencies
spaln-data have the following dependencies:
References
Summary
In this tutorial we learn how to install spaln-data package on Debian 12 using different package management tools: apt, apt-get and aptitude.
