How To Install r-cran-samr on Debian 10
Introduction
In this tutorial we learn how to install r-cran-samr on Debian 10.
What is r-cran-samr
r-cran-samr is:
This GNU R package provides significance analysis of microarrays. A microarray is a multiplex lab-on-a-chip. It is a 2D array on a solid substrate (usually a glass slide or silicon thin-film cell) that assays large amounts of biological material using high-throughput screening miniaturized, multiplexed and parallel processing and detection methods.
This package helps analysing this kind of microarrays.
There are three methods to install r-cran-samr on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-samr Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-samr using apt-get by running the following command:
sudo apt-get -y install r-cran-samr
Install r-cran-samr Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-samr using apt by running the following command:
sudo apt -y install r-cran-samr
Install r-cran-samr Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-samr using aptitude by running the following command:
sudo aptitude -y install r-cran-samr
How To Uninstall r-cran-samr on Debian 10
To uninstall only the r-cran-samr package we can use the following command:
sudo apt-get remove r-cran-samr
Uninstall r-cran-samr And Its Dependencies
To uninstall r-cran-samr and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove r-cran-samr
Remove r-cran-samr Configurations and Data
To remove r-cran-samr configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge r-cran-samr
Remove r-cran-samr configuration, data, and all of its dependencies
We can use the following command to remove r-cran-samr configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-samr
Dependencies
r-cran-samr have the following dependencies:
- r-base-core
- r-api-3.5
- r-bioc-impute
- r-cran-matrixstats
- r-cran-shiny
- r-cran-shinyfiles
- r-cran-openxlsx
- r-cran-gsa
- libc6
- libgfortran5
- libquadmath0
References
Summary
In this tutorial we learn how to install r-cran-samr package on Debian 10 using different package management tools: apt, apt-get and aptitude.
