How To Install r-bioc-tximport on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-tximport on Kali Linux.
What is r-bioc-tximport
r-bioc-tximport is:
Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
There are three methods to install r-bioc-tximport on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-tximport Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install r-bioc-tximport using apt-get by running the following command:
sudo apt-get -y install r-bioc-tximportInstall r-bioc-tximport Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install r-bioc-tximport using apt by running the following command:
sudo apt -y install r-bioc-tximportInstall r-bioc-tximport Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install r-bioc-tximport using aptitude by running the following command:
sudo aptitude -y install r-bioc-tximportHow To Uninstall r-bioc-tximport on Kali Linux
To uninstall only the r-bioc-tximport package we can use the following command:
sudo apt-get remove r-bioc-tximportUninstall r-bioc-tximport And Its Dependencies
To uninstall r-bioc-tximport and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-tximportRemove r-bioc-tximport Configurations and Data
To remove r-bioc-tximport configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-tximportRemove r-bioc-tximport configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-tximport configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-tximportDependencies
r-bioc-tximport have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-tximport package on Kali Linux using different package management tools: apt, apt-get and aptitude.
