How To Install r-bioc-multtest on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-multtest
on Debian 12.
What is r-bioc-multtest
r-bioc-multtest is:
Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included. When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function. Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.
There are three methods to install r-bioc-multtest
on Debian 12. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-multtest Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-multtest
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-multtest
Install r-bioc-multtest Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-multtest
using apt
by running the following command:
sudo apt -y install r-bioc-multtest
Install r-bioc-multtest Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-multtest
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-multtest
How To Uninstall r-bioc-multtest on Debian 12
To uninstall only the r-bioc-multtest
package we can use the following command:
sudo apt-get remove r-bioc-multtest
Uninstall r-bioc-multtest And Its Dependencies
To uninstall r-bioc-multtest
and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-multtest
Remove r-bioc-multtest Configurations and Data
To remove r-bioc-multtest
configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-multtest
Remove r-bioc-multtest configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-multtest
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-multtest
Dependencies
r-bioc-multtest have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-multtest
package on Debian 12 using different package management tools: apt
, apt-get
and aptitude
.