How To Install r-bioc-hsmmsinglecell on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-hsmmsinglecell on Kali Linux.
What is r-bioc-hsmmsinglecell
r-bioc-hsmmsinglecell is:
Skeletal myoblasts undergo a well-characterized sequence of morphological and transcriptional changes during differentiation. In this experiment, primary human skeletal muscle myoblasts (HSMM) were expanded under high mitogen conditions (GM) and then differentiated by switching to low-mitogen media (DM). RNA-Seq libraries were sequenced from each of several hundred cells taken over a time-course of serum- induced differentiation. Between 49 and 77 cells were captured at each of four time points (0, 24, 48, 72 hours) following serum switch using the Fluidigm C1 microfluidic system. RNA from each cell was isolated and used to construct mRNA-Seq libraries, which were then sequenced to a depth of ~4 million reads per library, resulting in a complete gene expression profile for each cell.
There are three methods to install r-bioc-hsmmsinglecell on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-hsmmsinglecell Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install r-bioc-hsmmsinglecell using apt-get by running the following command:
sudo apt-get -y install r-bioc-hsmmsinglecellInstall r-bioc-hsmmsinglecell Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install r-bioc-hsmmsinglecell using apt by running the following command:
sudo apt -y install r-bioc-hsmmsinglecellInstall r-bioc-hsmmsinglecell Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install r-bioc-hsmmsinglecell using aptitude by running the following command:
sudo aptitude -y install r-bioc-hsmmsinglecellHow To Uninstall r-bioc-hsmmsinglecell on Kali Linux
To uninstall only the r-bioc-hsmmsinglecell package we can use the following command:
sudo apt-get remove r-bioc-hsmmsinglecellUninstall r-bioc-hsmmsinglecell And Its Dependencies
To uninstall r-bioc-hsmmsinglecell and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-hsmmsinglecellRemove r-bioc-hsmmsinglecell Configurations and Data
To remove r-bioc-hsmmsinglecell configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-hsmmsinglecellRemove r-bioc-hsmmsinglecell configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-hsmmsinglecell configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-hsmmsinglecellDependencies
r-bioc-hsmmsinglecell have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-hsmmsinglecell package on Kali Linux using different package management tools: apt, apt-get and aptitude.
