How To Install r-bioc-goseq on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-goseq on Debian 12.
What is r-bioc-goseq
r-bioc-goseq is:
This GNU R package provides functions to detect Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.
There are three methods to install r-bioc-goseq on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-goseq Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-goseq using apt-get by running the following command:
sudo apt-get -y install r-bioc-goseq
Install r-bioc-goseq Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-goseq using apt by running the following command:
sudo apt -y install r-bioc-goseq
Install r-bioc-goseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-goseq using aptitude by running the following command:
sudo aptitude -y install r-bioc-goseq
How To Uninstall r-bioc-goseq on Debian 12
To uninstall only the r-bioc-goseq package we can use the following command:
sudo apt-get remove r-bioc-goseq
Uninstall r-bioc-goseq And Its Dependencies
To uninstall r-bioc-goseq and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-goseq
Remove r-bioc-goseq Configurations and Data
To remove r-bioc-goseq configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-goseq
Remove r-bioc-goseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-goseq configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-goseq
Dependencies
r-bioc-goseq have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-biasedurn
- r-bioc-genelendatabase
- r-cran-mgcv
- r-bioc-annotationdbi
- r-bioc-go.db
- r-bioc-biocgenerics
References
Summary
In this tutorial we learn how to install r-bioc-goseq package on Debian 12 using different package management tools: apt, apt-get and aptitude.
