How To Install r-bioc-genomicfiles on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-genomicfiles
on Kali Linux.
What is r-bioc-genomicfiles
r-bioc-genomicfiles is:
This package provides infrastructure for parallel computations distributed ‘by file’ or ‘by range’. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
There are three methods to install r-bioc-genomicfiles
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-genomicfiles Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-genomicfiles
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-genomicfiles
Install r-bioc-genomicfiles Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-genomicfiles
using apt
by running the following command:
sudo apt -y install r-bioc-genomicfiles
Install r-bioc-genomicfiles Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-genomicfiles
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-genomicfiles
How To Uninstall r-bioc-genomicfiles on Kali Linux
To uninstall only the r-bioc-genomicfiles
package we can use the following command:
sudo apt-get remove r-bioc-genomicfiles
Uninstall r-bioc-genomicfiles And Its Dependencies
To uninstall r-bioc-genomicfiles
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-genomicfiles
Remove r-bioc-genomicfiles Configurations and Data
To remove r-bioc-genomicfiles
configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-genomicfiles
Remove r-bioc-genomicfiles configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-genomicfiles
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-genomicfiles
Dependencies
r-bioc-genomicfiles have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-biocgenerics
- r-bioc-matrixgenerics
- r-bioc-genomicranges
- r-bioc-summarizedexperiment
- r-bioc-biocparallel
- r-bioc-rsamtools
- r-bioc-rtracklayer
- r-bioc-genomicalignments
- r-bioc-iranges
- r-bioc-s4vectors
- r-bioc-variantannotation
- r-bioc-genomeinfodb
References
Summary
In this tutorial we learn how to install r-bioc-genomicfiles
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.