How To Install r-bioc-geneplotter on Debian 9
Introduction
In this tutorial we learn how to install r-bioc-geneplotter on Debian 9.
What is r-bioc-geneplotter
r-bioc-geneplotter is:
geneplotter contains plotting functions for microarrays
There are three methods to install r-bioc-geneplotter on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-geneplotter Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-geneplotter using apt-get by running the following command:
sudo apt-get -y install r-bioc-geneplotter
Install r-bioc-geneplotter Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-geneplotter using apt by running the following command:
sudo apt -y install r-bioc-geneplotter
Install r-bioc-geneplotter Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-geneplotter using aptitude by running the following command:
sudo aptitude -y install r-bioc-geneplotter
How To Uninstall r-bioc-geneplotter on Debian 9
To uninstall only the r-bioc-geneplotter package we can use the following command:
sudo apt-get remove r-bioc-geneplotter
Uninstall r-bioc-geneplotter And Its Dependencies
To uninstall r-bioc-geneplotter and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove r-bioc-geneplotter
Remove r-bioc-geneplotter Configurations and Data
To remove r-bioc-geneplotter configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge r-bioc-geneplotter
Remove r-bioc-geneplotter configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-geneplotter configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-geneplotter
Dependencies
r-bioc-geneplotter have the following dependencies:
- r-base-core
- r-api-3
- r-bioc-biobase
- r-bioc-biocgenerics
- r-cran-lattice
- r-bioc-annotate
- r-bioc-annotationdbi
- r-cran-rcolorbrewer
References
Summary
In this tutorial we learn how to install r-bioc-geneplotter package on Debian 9 using different package management tools: apt, apt-get and aptitude.
