How To Install r-bioc-ebseq on Ubuntu 20.04
Introduction
In this tutorial we learn how to install r-bioc-ebseq on Ubuntu 20.04.
What is r-bioc-ebseq
r-bioc-ebseq is:
r-bioc-ebseq is an R package for identifying genes and isoforms differentially expressed (DE) across two or more biological conditions in an RNA-seq experiment.
There are three methods to install r-bioc-ebseq on Ubuntu 20.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-ebseq Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-ebseq using apt-get by running the following command:
sudo apt-get -y install r-bioc-ebseq
Install r-bioc-ebseq Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-ebseq using apt by running the following command:
sudo apt -y install r-bioc-ebseq
Install r-bioc-ebseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-ebseq using aptitude by running the following command:
sudo aptitude -y install r-bioc-ebseq
How To Uninstall r-bioc-ebseq on Ubuntu 20.04
To uninstall only the r-bioc-ebseq package we can use the following command:
sudo apt-get remove r-bioc-ebseq
Uninstall r-bioc-ebseq And Its Dependencies
To uninstall r-bioc-ebseq and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-ebseq
Remove r-bioc-ebseq Configurations and Data
To remove r-bioc-ebseq configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge r-bioc-ebseq
Remove r-bioc-ebseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-ebseq configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-ebseq
References
Summary
In this tutorial we learn how to install r-bioc-ebseq package on Ubuntu 20.04 using different package management tools: apt, apt-get and aptitude.
