How To Install r-bioc-biocsingular on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-biocsingular on Debian 12.
What is r-bioc-biocsingular
r-bioc-biocsingular is:
Implements exact and approximate methods for singular value decomposition and principal components analysis, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Where possible, parallelization is achieved using the BiocParallel framework.
There are three methods to install r-bioc-biocsingular on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-biocsingular Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-biocsingular using apt-get by running the following command:
sudo apt-get -y install r-bioc-biocsingular
Install r-bioc-biocsingular Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-biocsingular using apt by running the following command:
sudo apt -y install r-bioc-biocsingular
Install r-bioc-biocsingular Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-biocsingular using aptitude by running the following command:
sudo aptitude -y install r-bioc-biocsingular
How To Uninstall r-bioc-biocsingular on Debian 12
To uninstall only the r-bioc-biocsingular package we can use the following command:
sudo apt-get remove r-bioc-biocsingular
Uninstall r-bioc-biocsingular And Its Dependencies
To uninstall r-bioc-biocsingular and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-biocsingular
Remove r-bioc-biocsingular Configurations and Data
To remove r-bioc-biocsingular configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-biocsingular
Remove r-bioc-biocsingular configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-biocsingular configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-biocsingular
Dependencies
r-bioc-biocsingular have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-cran-matrix
- r-bioc-delayedarray
- r-bioc-biocparallel
- r-bioc-scaledmatrix
- r-cran-irlba
- r-cran-rsvd
- r-cran-rcpp
- r-bioc-beachmat
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-biocsingular package on Debian 12 using different package management tools: apt, apt-get and aptitude.
