How To Install r-bioc-annotationdbi on Debian 10
Introduction
In this tutorial we learn how to install r-bioc-annotationdbi on Debian 10.
What is r-bioc-annotationdbi
r-bioc-annotationdbi is:
This BioConductor module provides user interface and database connection code for annotation data packages using SQLite data storage.
There are three methods to install r-bioc-annotationdbi on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-annotationdbi Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-annotationdbi using apt-get by running the following command:
sudo apt-get -y install r-bioc-annotationdbi
Install r-bioc-annotationdbi Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-annotationdbi using apt by running the following command:
sudo apt -y install r-bioc-annotationdbi
Install r-bioc-annotationdbi Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-annotationdbi using aptitude by running the following command:
sudo aptitude -y install r-bioc-annotationdbi
How To Uninstall r-bioc-annotationdbi on Debian 10
To uninstall only the r-bioc-annotationdbi package we can use the following command:
sudo apt-get remove r-bioc-annotationdbi
Uninstall r-bioc-annotationdbi And Its Dependencies
To uninstall r-bioc-annotationdbi and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove r-bioc-annotationdbi
Remove r-bioc-annotationdbi Configurations and Data
To remove r-bioc-annotationdbi configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge r-bioc-annotationdbi
Remove r-bioc-annotationdbi configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-annotationdbi configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-annotationdbi
Dependencies
r-bioc-annotationdbi have the following dependencies:
- r-base-core
- r-api-3.5
- r-bioc-biocgenerics
- r-bioc-biobase
- r-bioc-iranges
- r-cran-dbi
- r-cran-rsqlite
- r-bioc-s4vectors
References
Summary
In this tutorial we learn how to install r-bioc-annotationdbi package on Debian 10 using different package management tools: apt, apt-get and aptitude.
