How To Install r-bioc-altcdfenvs on Debian 9
Introduction
In this tutorial we learn how to install r-bioc-altcdfenvs on Debian 9.
What is r-bioc-altcdfenvs
r-bioc-altcdfenvs is:
This BioConductor module provides alternative CDF environments (aka probeset mappings) which are Convenience data structures and functions to handle cdfenvs.
There are three methods to install r-bioc-altcdfenvs on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-altcdfenvs Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-altcdfenvs using apt-get by running the following command:
sudo apt-get -y install r-bioc-altcdfenvs
Install r-bioc-altcdfenvs Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-altcdfenvs using apt by running the following command:
sudo apt -y install r-bioc-altcdfenvs
Install r-bioc-altcdfenvs Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-altcdfenvs using aptitude by running the following command:
sudo aptitude -y install r-bioc-altcdfenvs
How To Uninstall r-bioc-altcdfenvs on Debian 9
To uninstall only the r-bioc-altcdfenvs package we can use the following command:
sudo apt-get remove r-bioc-altcdfenvs
Uninstall r-bioc-altcdfenvs And Its Dependencies
To uninstall r-bioc-altcdfenvs and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove r-bioc-altcdfenvs
Remove r-bioc-altcdfenvs Configurations and Data
To remove r-bioc-altcdfenvs configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge r-bioc-altcdfenvs
Remove r-bioc-altcdfenvs configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-altcdfenvs configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-altcdfenvs
Dependencies
r-bioc-altcdfenvs have the following dependencies:
- r-base-core
- r-api-3
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-biobase
- r-bioc-affy
- r-bioc-makecdfenv
- r-bioc-biostrings
- r-bioc-hypergraph
References
Summary
In this tutorial we learn how to install r-bioc-altcdfenvs package on Debian 9 using different package management tools: apt, apt-get and aptitude.
