How To Install python3-pyabpoa on Debian 12
Introduction
In this tutorial we learn how to install python3-pyabpoa on Debian 12.
What is python3-pyabpoa
python3-pyabpoa is:
abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.
abPOA can generate high-quality consensus sequences from error-prone long reads and offer significant speed improvement over existing tools.
abPOA supports three alignment modes (global, local, extension) and flexible scoring schemes that allow linear, affine and convex gap penalties. It right now supports SSE2/SSE4.1/AVX2 vectorization.
This package provides the python3 module of abPOA.
There are three methods to install python3-pyabpoa on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-pyabpoa Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-pyabpoa using apt-get by running the following command:
sudo apt-get -y install python3-pyabpoa
Install python3-pyabpoa Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-pyabpoa using apt by running the following command:
sudo apt -y install python3-pyabpoa
Install python3-pyabpoa Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-pyabpoa using aptitude by running the following command:
sudo aptitude -y install python3-pyabpoa
How To Uninstall python3-pyabpoa on Debian 12
To uninstall only the python3-pyabpoa package we can use the following command:
sudo apt-get remove python3-pyabpoa
Uninstall python3-pyabpoa And Its Dependencies
To uninstall python3-pyabpoa and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove python3-pyabpoa
Remove python3-pyabpoa Configurations and Data
To remove python3-pyabpoa configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge python3-pyabpoa
Remove python3-pyabpoa configuration, data, and all of its dependencies
We can use the following command to remove python3-pyabpoa configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-pyabpoa
Dependencies
python3-pyabpoa have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-pyabpoa package on Debian 12 using different package management tools: apt, apt-get and aptitude.
