How To Install python3-bcbio on Kali Linux
Introduction
In this tutorial we learn how to install python3-bcbio on Kali Linux.
What is python3-bcbio
python3-bcbio is:
This package installs the Python 3 libraries of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis.
A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.
There are three methods to install python3-bcbio on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-bcbio Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install python3-bcbio using apt-get by running the following command:
sudo apt-get -y install python3-bcbioInstall python3-bcbio Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install python3-bcbio using apt by running the following command:
sudo apt -y install python3-bcbioInstall python3-bcbio Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install python3-bcbio using aptitude by running the following command:
sudo aptitude -y install python3-bcbioHow To Uninstall python3-bcbio on Kali Linux
To uninstall only the python3-bcbio package we can use the following command:
sudo apt-get remove python3-bcbioUninstall python3-bcbio And Its Dependencies
To uninstall python3-bcbio and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove python3-bcbioRemove python3-bcbio Configurations and Data
To remove python3-bcbio configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge python3-bcbioRemove python3-bcbio configuration, data, and all of its dependencies
We can use the following command to remove python3-bcbio configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-bcbioDependencies
python3-bcbio have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-bcbio package on Kali Linux using different package management tools: apt, apt-get and aptitude.
