How To Install python-fast5 on Debian 10

Learn how to install python-fast5 on Debian 10 with this tutorial. python-fast5 is library for reading Oxford Nanopore Fast5 files – Python 2

Introduction

In this tutorial we learn how to install python-fast5 on Debian 10.

What is python-fast5

python-fast5 is:

A lightweight C++11 library to read raw signal data from Oxford Nanopore’s FAST5 files.

This package provides the Python 2 library

There are three methods to install python-fast5 on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install python-fast5 Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install python-fast5 using apt-get by running the following command:

sudo apt-get -y install python-fast5

Install python-fast5 Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install python-fast5 using apt by running the following command:

sudo apt -y install python-fast5

Install python-fast5 Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install python-fast5 using aptitude by running the following command:

sudo aptitude -y install python-fast5

How To Uninstall python-fast5 on Debian 10

To uninstall only the python-fast5 package we can use the following command:

sudo apt-get remove python-fast5

Uninstall python-fast5 And Its Dependencies

To uninstall python-fast5 and its dependencies that are no longer needed by Debian 10, we can use the command below:

sudo apt-get -y autoremove python-fast5

Remove python-fast5 Configurations and Data

To remove python-fast5 configuration and data from Debian 10 we can use the following command:

sudo apt-get -y purge python-fast5

Remove python-fast5 configuration, data, and all of its dependencies

We can use the following command to remove python-fast5 configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge python-fast5

Dependencies

python-fast5 have the following dependencies:

References

Summary

In this tutorial we learn how to install python-fast5 package on Debian 10 using different package management tools: apt, apt-get and aptitude.