How To Install predictprotein on Ubuntu 18.04
Introduction
In this tutorial we learn how to install predictprotein on Ubuntu 18.04.
What is predictprotein
predictprotein is:
PredictProtein is a sequence analysis suite providing prediction of protein structure and function.
PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations:
- secondary structure
- solvent accessibility
- multiple sequence alignments
- PROSITE sequence motifs
- low-complexity regions
- nuclear localisation signals
- regions lacking regular structure (NORS)
- unstructured loops
- transmembrane helices
- transmembrane beta barrels
- coiled-coil regions
- disulfide-bonds
- disordered regions
- B-value flexibility
- protein-protein interaction sites
- Gene Ontology terms
There are three methods to install predictprotein on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install predictprotein Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install predictprotein using apt-get by running the following command:
sudo apt-get -y install predictprotein
Install predictprotein Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install predictprotein using apt by running the following command:
sudo apt -y install predictprotein
Install predictprotein Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install predictprotein using aptitude by running the following command:
sudo aptitude -y install predictprotein
How To Uninstall predictprotein on Ubuntu 18.04
To uninstall only the predictprotein package we can use the following command:
sudo apt-get remove predictprotein
Uninstall predictprotein And Its Dependencies
To uninstall predictprotein and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove predictprotein
Remove predictprotein Configurations and Data
To remove predictprotein configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge predictprotein
Remove predictprotein configuration, data, and all of its dependencies
We can use the following command to remove predictprotein configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge predictprotein
References
Summary
In this tutorial we learn how to install predictprotein package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.
