How To Install mmseqs2-examples on Debian 12
Introduction
In this tutorial we learn how to install mmseqs2-examples
on Debian 12.
What is mmseqs2-examples
mmseqs2-examples is:
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwim) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.
There are three methods to install mmseqs2-examples
on Debian 12. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install mmseqs2-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install mmseqs2-examples
using apt-get
by running the following command:
sudo apt-get -y install mmseqs2-examples
Install mmseqs2-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install mmseqs2-examples
using apt
by running the following command:
sudo apt -y install mmseqs2-examples
Install mmseqs2-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install mmseqs2-examples
using aptitude
by running the following command:
sudo aptitude -y install mmseqs2-examples
How To Uninstall mmseqs2-examples on Debian 12
To uninstall only the mmseqs2-examples
package we can use the following command:
sudo apt-get remove mmseqs2-examples
Uninstall mmseqs2-examples And Its Dependencies
To uninstall mmseqs2-examples
and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove mmseqs2-examples
Remove mmseqs2-examples Configurations and Data
To remove mmseqs2-examples
configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge mmseqs2-examples
Remove mmseqs2-examples configuration, data, and all of its dependencies
We can use the following command to remove mmseqs2-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge mmseqs2-examples
Dependencies
mmseqs2-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install mmseqs2-examples
package on Debian 12 using different package management tools: apt
, apt-get
and aptitude
.