How To Install lucy on Kali Linux

In this tutorial we learn how to install lucy on Kali Linux. lucy is DNA sequence quality and vector trimming tool

Introduction

In this tutorial we learn how to install lucy on Kali Linux.

What is lucy

lucy is:

Lucy is a utility that prepares raw DNA sequence fragments for sequence assembly, possibly using the TIGR Assembler. The cleanup process includes quality assessment, confidence reassurance, vector trimming and vector removal. The primary advantage of Lucy over other similar utilities is that it is a fully integrated, stand alone program.

Lucy was designed and written at The Institute for Genomic Research (TIGR, now the J. Craig Venter Institute), and it has been used here for several years to clean sequence data from automated DNA sequencers prior to sequence assembly and other downstream uses. The quality trimming portion of lucy makes use of phred quality scores, such as those produced by many automated sequencers based on the Sanger sequencing method. As such, lucy??s quality trimming may not be appropriate for sequence data produced by some of the new ??next-generation?? sequencers.

There are three methods to install lucy on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install lucy Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install lucy using apt-get by running the following command:

sudo apt-get -y install lucy

Install lucy Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install lucy using apt by running the following command:

sudo apt -y install lucy

Install lucy Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install lucy using aptitude by running the following command:

sudo aptitude -y install lucy

How To Uninstall lucy on Kali Linux

To uninstall only the lucy package we can use the following command:

sudo apt-get remove lucy

Uninstall lucy And Its Dependencies

To uninstall lucy and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove lucy

Remove lucy Configurations and Data

To remove lucy configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge lucy

Remove lucy configuration, data, and all of its dependencies

We can use the following command to remove lucy configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge lucy

Dependencies

lucy have the following dependencies:

References

Summary

In this tutorial we learn how to install lucy package on Kali Linux using different package management tools: apt, apt-get and aptitude.