How To Install loki-doc on Kali Linux

In this tutorial we learn how to install loki-doc on Kali Linux. loki-doc is MCMC linkage analysis on general pedigrees (PS manual)

Introduction

In this tutorial we learn how to install loki-doc on Kali Linux.

What is loki-doc

loki-doc is:

Performs Markov chain Monte Carlo multipoint linkage analysis on large, complex pedigrees. The current package supports analyses on quantitative traits only, although this restriction will be lifted in later versions. Joint estimation of QTL number, position and effects uses Reversible Jump MCMC. It is also possible to perform affected only IBD sharing analyses.

Documentation on how to use Simon Heath’s “prep” and “loki” tools for MCMC genetic linkage and IBD analysis on general pedigrees.

There are three methods to install loki-doc on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install loki-doc Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install loki-doc using apt-get by running the following command:

sudo apt-get -y install loki-doc

Install loki-doc Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install loki-doc using apt by running the following command:

sudo apt -y install loki-doc

Install loki-doc Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install loki-doc using aptitude by running the following command:

sudo aptitude -y install loki-doc

How To Uninstall loki-doc on Kali Linux

To uninstall only the loki-doc package we can use the following command:

sudo apt-get remove loki-doc

Uninstall loki-doc And Its Dependencies

To uninstall loki-doc and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove loki-doc

Remove loki-doc Configurations and Data

To remove loki-doc configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge loki-doc

Remove loki-doc configuration, data, and all of its dependencies

We can use the following command to remove loki-doc configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge loki-doc

Dependencies

loki-doc have the following dependencies:

References

Summary

In this tutorial we learn how to install loki-doc package on Kali Linux using different package management tools: apt, apt-get and aptitude.