How To Install libnhgri-blastall-perl on Debian 9
Introduction
In this tutorial we learn how to install libnhgri-blastall-perl
on Debian 9.
What is libnhgri-blastall-perl
libnhgri-blastall-perl is:
NHGRI::Blastall will enable usage of BLAST out of a Perl script, if BLAST2 or WU-BLAST are installed locally. Main features are:
- run BLAST (also via network, which requires blastcl3)
- BLAST single sequences against each other or against a given library
- format databases
- mask out repetitive DNA
- read, parse and filter existing BLAST reports
There are three methods to install libnhgri-blastall-perl
on Debian 9. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install libnhgri-blastall-perl Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install libnhgri-blastall-perl
using apt-get
by running the following command:
sudo apt-get -y install libnhgri-blastall-perl
Install libnhgri-blastall-perl Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install libnhgri-blastall-perl
using apt
by running the following command:
sudo apt -y install libnhgri-blastall-perl
Install libnhgri-blastall-perl Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install libnhgri-blastall-perl
using aptitude
by running the following command:
sudo aptitude -y install libnhgri-blastall-perl
How To Uninstall libnhgri-blastall-perl on Debian 9
To uninstall only the libnhgri-blastall-perl
package we can use the following command:
sudo apt-get remove libnhgri-blastall-perl
Uninstall libnhgri-blastall-perl And Its Dependencies
To uninstall libnhgri-blastall-perl
and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove libnhgri-blastall-perl
Remove libnhgri-blastall-perl Configurations and Data
To remove libnhgri-blastall-perl
configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge libnhgri-blastall-perl
Remove libnhgri-blastall-perl configuration, data, and all of its dependencies
We can use the following command to remove libnhgri-blastall-perl
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libnhgri-blastall-perl
Dependencies
libnhgri-blastall-perl have the following dependencies:
References
Summary
In this tutorial we learn how to install libnhgri-blastall-perl
package on Debian 9 using different package management tools: apt
, apt-get
and aptitude
.