How To Install libhtsjdk-java-doc on Ubuntu 20.04
Introduction
In this tutorial we learn how to install libhtsjdk-java-doc on Ubuntu 20.04.
What is libhtsjdk-java-doc
libhtsjdk-java-doc is:
HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM (Sequence Alignment/Map) and VCF, used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data.
This package contains the javadoc of the library.
There are three methods to install libhtsjdk-java-doc on Ubuntu 20.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libhtsjdk-java-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install libhtsjdk-java-doc using apt-get by running the following command:
sudo apt-get -y install libhtsjdk-java-doc
Install libhtsjdk-java-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install libhtsjdk-java-doc using apt by running the following command:
sudo apt -y install libhtsjdk-java-doc
Install libhtsjdk-java-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install libhtsjdk-java-doc using aptitude by running the following command:
sudo aptitude -y install libhtsjdk-java-doc
How To Uninstall libhtsjdk-java-doc on Ubuntu 20.04
To uninstall only the libhtsjdk-java-doc package we can use the following command:
sudo apt-get remove libhtsjdk-java-doc
Uninstall libhtsjdk-java-doc And Its Dependencies
To uninstall libhtsjdk-java-doc and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove libhtsjdk-java-doc
Remove libhtsjdk-java-doc Configurations and Data
To remove libhtsjdk-java-doc configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge libhtsjdk-java-doc
Remove libhtsjdk-java-doc configuration, data, and all of its dependencies
We can use the following command to remove libhtsjdk-java-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libhtsjdk-java-doc
References
Summary
In this tutorial we learn how to install libhtsjdk-java-doc package on Ubuntu 20.04 using different package management tools: apt, apt-get and aptitude.