How To Install circos on Debian 9
Introduction
In this tutorial we learn how to install circos on Debian 9.
What is circos
circos is:
Circos visualizes data in a circular layout ?? ideal for exploring relationships between objects or positions, and creating highly informative publication-quality graphics.
This package provides the Circos plotting engine, which is command-line driven (like gnuplot) and fully scriptable.
There are three methods to install circos on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install circos Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install circos using apt-get by running the following command:
sudo apt-get -y install circos
Install circos Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install circos using apt by running the following command:
sudo apt -y install circos
Install circos Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install circos using aptitude by running the following command:
sudo aptitude -y install circos
How To Uninstall circos on Debian 9
To uninstall only the circos package we can use the following command:
sudo apt-get remove circos
Uninstall circos And Its Dependencies
To uninstall circos and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove circos
Remove circos Configurations and Data
To remove circos configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge circos
Remove circos configuration, data, and all of its dependencies
We can use the following command to remove circos configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge circos
Dependencies
circos have the following dependencies:
- perl
- fonts-circos-symbols
- fonts-cmu
- libregexp-common-perl
- libcarp-always-perl
- libconfig-general-perl
- libdata-dumper-simple-perl
- libgd-gd2-perl
- libgetopt-simple-perl
- libmath-bezier-perl
- libmath-round-perl
- libparams-validate-perl
- libreadonly-perl
- libset-intspan-perl
- liblist-allutils-perl
- libfile-basedir-perl
- perl
- libmath-vec-perl
- libio-all-perl
- libmath-vecstat-perl
- libgraphics-colorobject-perl
- libtext-format-perl
- libfont-ttf-perl
- libclone-perl
- libstatistics-basic-perl
References
Summary
In this tutorial we learn how to install circos package on Debian 9 using different package management tools: apt, apt-get and aptitude.
