How To Install beast-mcmc-doc on Debian 9
Introduction
In this tutorial we learn how to install beast-mcmc-doc on Debian 9.
What is beast-mcmc-doc
beast-mcmc-doc is:
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.
This package contains the documentation.
There are three methods to install beast-mcmc-doc on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install beast-mcmc-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install beast-mcmc-doc using apt-get by running the following command:
sudo apt-get -y install beast-mcmc-doc
Install beast-mcmc-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install beast-mcmc-doc using apt by running the following command:
sudo apt -y install beast-mcmc-doc
Install beast-mcmc-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install beast-mcmc-doc using aptitude by running the following command:
sudo aptitude -y install beast-mcmc-doc
How To Uninstall beast-mcmc-doc on Debian 9
To uninstall only the beast-mcmc-doc package we can use the following command:
sudo apt-get remove beast-mcmc-doc
Uninstall beast-mcmc-doc And Its Dependencies
To uninstall beast-mcmc-doc and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove beast-mcmc-doc
Remove beast-mcmc-doc Configurations and Data
To remove beast-mcmc-doc configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge beast-mcmc-doc
Remove beast-mcmc-doc configuration, data, and all of its dependencies
We can use the following command to remove beast-mcmc-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge beast-mcmc-doc
Dependencies
beast-mcmc-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install beast-mcmc-doc package on Debian 9 using different package management tools: apt, apt-get and aptitude.
