How To Install R-Biostrings on Fedora 36

In this tutorial we learn how to install R-Biostrings in Fedora 36. R-Biostrings is String objects representing biological sequences

Introduction

In this tutorial we learn how to install R-Biostrings on Fedora 36.

What is R-Biostrings

Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or set of sequences.

We can use yum or dnf to install R-Biostrings on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install R-Biostrings.

Install R-Biostrings on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install R-Biostrings using dnf by running the following command:

sudo dnf -y install R-Biostrings

Install R-Biostrings on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install R-Biostrings using yum by running the following command:

sudo yum -y install R-Biostrings

How To Uninstall R-Biostrings on Fedora 36

To uninstall only the R-Biostrings package we can use the following command:

sudo dnf remove R-Biostrings

R-Biostrings Package Contents on Fedora 36

/usr/lib/.build-id
/usr/lib/.build-id/d0
/usr/lib/.build-id/d0/90338f34ef136095205fb8c0547fe96abdec45
/usr/lib64/R/library/Biostrings
/usr/lib64/R/library/Biostrings/DESCRIPTION
/usr/lib64/R/library/Biostrings/INDEX
/usr/lib64/R/library/Biostrings/Meta
/usr/lib64/R/library/Biostrings/Meta/Rd.rds
/usr/lib64/R/library/Biostrings/Meta/data.rds
/usr/lib64/R/library/Biostrings/Meta/features.rds
/usr/lib64/R/library/Biostrings/Meta/hsearch.rds
/usr/lib64/R/library/Biostrings/Meta/links.rds
/usr/lib64/R/library/Biostrings/Meta/nsInfo.rds
/usr/lib64/R/library/Biostrings/Meta/package.rds
/usr/lib64/R/library/Biostrings/Meta/vignette.rds
/usr/lib64/R/library/Biostrings/NAMESPACE
/usr/lib64/R/library/Biostrings/NEWS
/usr/lib64/R/library/Biostrings/R
/usr/lib64/R/library/Biostrings/R/Biostrings
/usr/lib64/R/library/Biostrings/R/Biostrings.rdb
/usr/lib64/R/library/Biostrings/R/Biostrings.rdx
/usr/lib64/R/library/Biostrings/data
/usr/lib64/R/library/Biostrings/data/BLOSUM100.rda
/usr/lib64/R/library/Biostrings/data/BLOSUM45.rda
/usr/lib64/R/library/Biostrings/data/BLOSUM50.rda
/usr/lib64/R/library/Biostrings/data/BLOSUM62.rda
/usr/lib64/R/library/Biostrings/data/BLOSUM80.rda
/usr/lib64/R/library/Biostrings/data/HNF4alpha.rda
/usr/lib64/R/library/Biostrings/data/PAM120.rda
/usr/lib64/R/library/Biostrings/data/PAM250.rda
/usr/lib64/R/library/Biostrings/data/PAM30.rda
/usr/lib64/R/library/Biostrings/data/PAM40.rda
/usr/lib64/R/library/Biostrings/data/PAM70.rda
/usr/lib64/R/library/Biostrings/data/phiX174Phage.rda
/usr/lib64/R/library/Biostrings/data/srPhiX174.rda
/usr/lib64/R/library/Biostrings/data/yeastSEQCHR1.rda
/usr/lib64/R/library/Biostrings/doc
/usr/lib64/R/library/Biostrings/doc/Biostrings2Classes.R
/usr/lib64/R/library/Biostrings/doc/Biostrings2Classes.Rnw
/usr/lib64/R/library/Biostrings/doc/Biostrings2Classes.pdf
/usr/lib64/R/library/Biostrings/doc/BiostringsQuickOverview.Rnw
/usr/lib64/R/library/Biostrings/doc/BiostringsQuickOverview.pdf
/usr/lib64/R/library/Biostrings/doc/MultipleAlignments.R
/usr/lib64/R/library/Biostrings/doc/MultipleAlignments.Rnw
/usr/lib64/R/library/Biostrings/doc/MultipleAlignments.pdf
/usr/lib64/R/library/Biostrings/doc/PairwiseAlignments.R
/usr/lib64/R/library/Biostrings/doc/PairwiseAlignments.Rnw
/usr/lib64/R/library/Biostrings/doc/PairwiseAlignments.pdf
/usr/lib64/R/library/Biostrings/doc/index.html
/usr/lib64/R/library/Biostrings/doc/matchprobes.R
/usr/lib64/R/library/Biostrings/doc/matchprobes.Rnw
/usr/lib64/R/library/Biostrings/doc/matchprobes.pdf
/usr/lib64/R/library/Biostrings/extdata
/usr/lib64/R/library/Biostrings/extdata/Phylip.txt
/usr/lib64/R/library/Biostrings/extdata/README
/usr/lib64/R/library/Biostrings/extdata/Sc.fa
/usr/lib64/R/library/Biostrings/extdata/Sp.fa
/usr/lib64/R/library/Biostrings/extdata/dm3_upstream2000.fa.gz
/usr/lib64/R/library/Biostrings/extdata/fastaEx.fa
/usr/lib64/R/library/Biostrings/extdata/hg18chr8_gap.txt
/usr/lib64/R/library/Biostrings/extdata/hg18chrY_gap.txt
/usr/lib64/R/library/Biostrings/extdata/msx2_mRNA.aln
/usr/lib64/R/library/Biostrings/extdata/s_1_sequence.txt
/usr/lib64/R/library/Biostrings/extdata/someORF.fa
/usr/lib64/R/library/Biostrings/extdata/someORF.fa.gz
/usr/lib64/R/library/Biostrings/help
/usr/lib64/R/library/Biostrings/help/+21+3D+2CBString+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/+21+3D+2CXString+2CXString-method.html
/usr/lib64/R/library/Biostrings/help/+21+3D+2CXString+2CXStringViews-method.html
/usr/lib64/R/library/Biostrings/help/+21+3D+2CXStringViews+2CXString-method.html
/usr/lib64/R/library/Biostrings/help/+21+3D+2CXStringViews+2CXStringViews-method.html
/usr/lib64/R/library/Biostrings/help/+21+3D+2CXStringViews+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/+21+3D+2Ccharacter+2CBString-method.html
/usr/lib64/R/library/Biostrings/help/+21+3D+2Ccharacter+2CXStringViews-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2CBString+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2CXString+2CXString-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2CXString+2CXStringViews-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2CXStringViews+2CXString-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2CXStringViews+2CXStringViews-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2CXStringViews+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2Ccharacter+2CBString-method.html
/usr/lib64/R/library/Biostrings/help/+3D+3D+2Ccharacter+2CXStringViews-method.html
/usr/lib64/R/library/Biostrings/help/+5B+2CXStringPartialMatches-method.html
/usr/lib64/R/library/Biostrings/help/+5B+5B+2CByPos_MIndex-method.html
/usr/lib64/R/library/Biostrings/help/+5B+5B+2CPDict-method.html
/usr/lib64/R/library/Biostrings/help/+5B+5B+2CSparseList-method.html
/usr/lib64/R/library/Biostrings/help/.inplaceReplaceLetterAt.html
/usr/lib64/R/library/Biostrings/help/AAMultipleAlignment-class.html
/usr/lib64/R/library/Biostrings/help/AAMultipleAlignment.html
/usr/lib64/R/library/Biostrings/help/AAString-class.html
/usr/lib64/R/library/Biostrings/help/AAString.html
/usr/lib64/R/library/Biostrings/help/AAStringSet-class.html
/usr/lib64/R/library/Biostrings/help/AAStringSet.html
/usr/lib64/R/library/Biostrings/help/AAStringSetList-class.html
/usr/lib64/R/library/Biostrings/help/AAStringSetList.html
/usr/lib64/R/library/Biostrings/help/AA_ALPHABET.html
/usr/lib64/R/library/Biostrings/help/AA_PROTEINOGENIC.html
/usr/lib64/R/library/Biostrings/help/AA_STANDARD.html
/usr/lib64/R/library/Biostrings/help/ACtree2-class.html
/usr/lib64/R/library/Biostrings/help/ACtree2.html
/usr/lib64/R/library/Biostrings/help/AMINO_ACID_CODE.html
/usr/lib64/R/library/Biostrings/help/AlignedXStringSet-class.html
/usr/lib64/R/library/Biostrings/help/AlignedXStringSet.html
/usr/lib64/R/library/Biostrings/help/AlignedXStringSet0-class.html
/usr/lib64/R/library/Biostrings/help/AlignedXStringSet0.html
/usr/lib64/R/library/Biostrings/help/AnIndex
/usr/lib64/R/library/Biostrings/help/BLOSUM100.html
/usr/lib64/R/library/Biostrings/help/BLOSUM45.html
/usr/lib64/R/library/Biostrings/help/BLOSUM50.html
/usr/lib64/R/library/Biostrings/help/BLOSUM62.html
/usr/lib64/R/library/Biostrings/help/BLOSUM80.html
/usr/lib64/R/library/Biostrings/help/BString-class.html
/usr/lib64/R/library/Biostrings/help/BString.html
/usr/lib64/R/library/Biostrings/help/BStringSet-class.html
/usr/lib64/R/library/Biostrings/help/BStringSet.html
/usr/lib64/R/library/Biostrings/help/BStringSetList-class.html
/usr/lib64/R/library/Biostrings/help/BStringSetList.html
/usr/lib64/R/library/Biostrings/help/Biostrings-internals.html
/usr/lib64/R/library/Biostrings/help/Biostrings.rdb
/usr/lib64/R/library/Biostrings/help/Biostrings.rdx
/usr/lib64/R/library/Biostrings/help/ByPos_MIndex-class.html
/usr/lib64/R/library/Biostrings/help/DNAMultipleAlignment-class.html
/usr/lib64/R/library/Biostrings/help/DNAMultipleAlignment.html
/usr/lib64/R/library/Biostrings/help/DNAString-class.html
/usr/lib64/R/library/Biostrings/help/DNAString.html
/usr/lib64/R/library/Biostrings/help/DNAStringSet-class.html
/usr/lib64/R/library/Biostrings/help/DNAStringSet.html
/usr/lib64/R/library/Biostrings/help/DNAStringSetList-class.html
/usr/lib64/R/library/Biostrings/help/DNAStringSetList.html
/usr/lib64/R/library/Biostrings/help/DNA_ALPHABET.html
/usr/lib64/R/library/Biostrings/help/DNA_BASES.html
/usr/lib64/R/library/Biostrings/help/Expanded_TB_PDict-class.html
/usr/lib64/R/library/Biostrings/help/Expanded_TB_PDict.html
/usr/lib64/R/library/Biostrings/help/GENETIC_CODE.html
/usr/lib64/R/library/Biostrings/help/GENETIC_CODE_TABLE.html
/usr/lib64/R/library/Biostrings/help/HNF4alpha.html
/usr/lib64/R/library/Biostrings/help/IUPAC_CODE_MAP.html
/usr/lib64/R/library/Biostrings/help/IlluminaQuality-class.html
/usr/lib64/R/library/Biostrings/help/IlluminaQuality.html
/usr/lib64/R/library/Biostrings/help/InDel-class.html
/usr/lib64/R/library/Biostrings/help/InDel.html
/usr/lib64/R/library/Biostrings/help/MIndex-class.html
/usr/lib64/R/library/Biostrings/help/MIndex.html
/usr/lib64/R/library/Biostrings/help/MTB_PDict-class.html
/usr/lib64/R/library/Biostrings/help/MTB_PDict.html
/usr/lib64/R/library/Biostrings/help/MaskedAAString-class.html
/usr/lib64/R/library/Biostrings/help/MaskedAAString.html
/usr/lib64/R/library/Biostrings/help/MaskedBString-class.html
/usr/lib64/R/library/Biostrings/help/MaskedBString.html
/usr/lib64/R/library/Biostrings/help/MaskedDNAString-class.html
/usr/lib64/R/library/Biostrings/help/MaskedDNAString.html
/usr/lib64/R/library/Biostrings/help/MaskedRNAString-class.html
/usr/lib64/R/library/Biostrings/help/MaskedRNAString.html
/usr/lib64/R/library/Biostrings/help/MaskedXString-class.html
/usr/lib64/R/library/Biostrings/help/MaskedXString.html
/usr/lib64/R/library/Biostrings/help/MultipleAlignment-class.html
/usr/lib64/R/library/Biostrings/help/MultipleAlignment.html
/usr/lib64/R/library/Biostrings/help/N50.html
/usr/lib64/R/library/Biostrings/help/PAM120.html
/usr/lib64/R/library/Biostrings/help/PAM250.html
/usr/lib64/R/library/Biostrings/help/PAM30.html
/usr/lib64/R/library/Biostrings/help/PAM40.html
/usr/lib64/R/library/Biostrings/help/PAM70.html
/usr/lib64/R/library/Biostrings/help/PDict+2CAsIs-method.html
/usr/lib64/R/library/Biostrings/help/PDict+2CDNAStringSet-method.html
/usr/lib64/R/library/Biostrings/help/PDict+2CXStringViews-method.html
/usr/lib64/R/library/Biostrings/help/PDict+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/PDict+2Cprobetable-method.html
/usr/lib64/R/library/Biostrings/help/PDict-class.html
/usr/lib64/R/library/Biostrings/help/PDict.html
/usr/lib64/R/library/Biostrings/help/PDict3Parts-class.html
/usr/lib64/R/library/Biostrings/help/PDict3Parts.html
/usr/lib64/R/library/Biostrings/help/PWM+2CDNAStringSet-method.html
/usr/lib64/R/library/Biostrings/help/PWM+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/PWM+2Cmatrix-method.html
/usr/lib64/R/library/Biostrings/help/PWM.html
/usr/lib64/R/library/Biostrings/help/PWMscoreStartingAt.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignments+2CXString+2CXString-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignments+2CXStringSet+2Cmissing-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignments+2Ccharacter+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignments+2Ccharacter+2Cmissing-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignments-class.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignments-io.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignments.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubject+2CXString+2CXString-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubject+2CXStringSet+2Cmissing-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubject+2Ccharacter+2Ccharacter-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubject+2Ccharacter+2Cmissing-method.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubject-class.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubject.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubjectSummary-class.html
/usr/lib64/R/library/Biostrings/help/PairwiseAlignmentsSingleSubjectSummary.html
/usr/lib64/R/library/Biostrings/help/PhredQuality-class.html
/usr/lib64/R/library/Biostrings/help/PhredQuality.html
/usr/lib64/R/library/Biostrings/help/PreprocessedTB-class.html
/usr/lib64/R/library/Biostrings/help/PreprocessedTB.html
/usr/lib64/R/library/Biostrings/help/QualityAlignedXStringSet-class.html
/usr/lib64/R/library/Biostrings/help/QualityAlignedXStringSet.html
/usr/lib64/R/library/Biostrings/help/QualityScaledAAStringSet-class.html
/usr/lib64/R/library/Biostrings/help/QualityScaledAAStringSet.html
/usr/lib64/R/library/Biostrings/help/QualityScaledBStringSet-class.html
/usr/lib64/R/library/Biostrings/help/QualityScaledBStringSet.html
/usr/lib64/R/library/Biostrings/help/QualityScaledDNAStringSet-class.html
/usr/lib64/R/library/Biostrings/help/QualityScaledDNAStringSet.html
/usr/lib64/R/library/Biostrings/help/QualityScaledRNAStringSet-class.html
/usr/lib64/R/library/Biostrings/help/QualityScaledRNAStringSet.html
/usr/lib64/R/library/Biostrings/help/QualityScaledXStringSet-class.html
/usr/lib64/R/library/Biostrings/help/QualityScaledXStringSet.html
/usr/lib64/R/library/Biostrings/help/RNAMultipleAlignment-class.html
/usr/lib64/R/library/Biostrings/help/RNAMultipleAlignment.html
/usr/lib64/R/library/Biostrings/help/RNAString-class.html
/usr/lib64/R/library/Biostrings/help/RNAString.html
/usr/lib64/R/library/Biostrings/help/RNAStringSet-class.html
/usr/lib64/R/library/Biostrings/help/RNAStringSet.html
/usr/lib64/R/library/Biostrings/help/RNAStringSetList-class.html
/usr/lib64/R/library/Biostrings/help/RNAStringSetList.html
/usr/lib64/R/library/Biostrings/help/RNA_ALPHABET.html
/usr/lib64/R/library/Biostrings/help/RNA_BASES.html
/usr/lib64/R/library/Biostrings/help/RNA_GENETIC_CODE.html
/usr/lib64/R/library/Biostrings/help/SolexaQuality-class.html
/usr/lib64/R/library/Biostrings/help/SolexaQuality.html
/usr/lib64/R/library/Biostrings/help/SparseList-class.html
/usr/lib64/R/library/Biostrings/help/SparseList.html
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/usr/lib64/R/library/Biostrings/help/TB_PDict.html
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/usr/lib64/R/library/Biostrings/html/R.css
/usr/lib64/R/library/Biostrings/html/RNAString-class.html
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/usr/lib64/R/library/Biostrings/html/findPalindromes.html
/usr/lib64/R/library/Biostrings/html/getSeq.html
/usr/lib64/R/library/Biostrings/html/gregexpr2.html
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/usr/lib64/R/library/Biostrings/html/letter.html
/usr/lib64/R/library/Biostrings/html/letterFrequency.html
/usr/lib64/R/library/Biostrings/html/longestConsecutive.html
/usr/lib64/R/library/Biostrings/html/lowlevel-matching.html
/usr/lib64/R/library/Biostrings/html/maskMotif.html
/usr/lib64/R/library/Biostrings/html/match-utils.html
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/usr/lib64/R/library/Biostrings/html/matchPDict-exact.html
/usr/lib64/R/library/Biostrings/html/matchPDict-inexact.html
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/usr/lib64/R/library/Biostrings/html/misc.html
/usr/lib64/R/library/Biostrings/html/needwunsQS.html
/usr/lib64/R/library/Biostrings/html/nucleotideFrequency.html
/usr/lib64/R/library/Biostrings/html/padAndClip.html
/usr/lib64/R/library/Biostrings/html/pairwiseAlignment.html
/usr/lib64/R/library/Biostrings/html/phiX174Phage.html
/usr/lib64/R/library/Biostrings/html/pid.html
/usr/lib64/R/library/Biostrings/html/pmatchPattern.html
/usr/lib64/R/library/Biostrings/html/replaceAt.html
/usr/lib64/R/library/Biostrings/html/replaceLetterAt.html
/usr/lib64/R/library/Biostrings/html/reverseComplement.html
/usr/lib64/R/library/Biostrings/html/seqinfo.html
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/usr/lib64/R/library/Biostrings/html/substitution_matrices.html
/usr/lib64/R/library/Biostrings/html/toComplex.html
/usr/lib64/R/library/Biostrings/html/translate.html
/usr/lib64/R/library/Biostrings/html/trimLRPatterns.html
/usr/lib64/R/library/Biostrings/html/xscat.html
/usr/lib64/R/library/Biostrings/html/yeastSEQCHR1.html
/usr/lib64/R/library/Biostrings/libs
/usr/lib64/R/library/Biostrings/libs/Biostrings.so
/usr/lib64/R/library/Biostrings/unitTests
/usr/lib64/R/library/Biostrings/unitTests/test_MultipleAlignment.R
/usr/lib64/R/library/Biostrings/unitTests/test_XString.R
/usr/lib64/R/library/Biostrings/unitTests/test_XStringSet.R
/usr/lib64/R/library/Biostrings/unitTests/test_XStringSetList.R
/usr/lib64/R/library/Biostrings/unitTests/test_findPalindromes.R
/usr/lib64/R/library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME
/usr/lib64/R/library/Biostrings/unitTests/test_matchPDict.R
/usr/lib64/R/library/Biostrings/unitTests/test_pairwiseAlignment.R
/usr/lib64/R/library/Biostrings/unitTests/test_seqinfo.R
/usr/lib64/R/library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R

References

Summary

In this tutorial we learn how to install R-Biostrings on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).