How To Install python3-spyking-circus on Fedora 36
In this tutorial we learn how to install python3-spyking-circus in Fedora 36. python3-spyking-circus is Fast and scalable spike sorting of large-scale extracellular recordings
Introduction
In this tutorial we learn how to install python3-spyking-circus on Fedora 36.
What is python3-spyking-circus
SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel recordings. A publication on the algorithm can be found at https It has been tested on datasets coming from in vitro retina with 252 electrodes MEA, from in vivo hippocampus with tetrodes, in vivo and in vitro cortex data with 30 and up to 4225 channels, with good results. Synthetic tests on these data show that cells firing at more than 0.5Hz can be detected, and their spikes recovered with error rates at around 1%, even resolving overlapping spikes and synchronous firing. It seems to be compatible with optogenetic stimulation, based on experimental data obtained in the retina.
We can use yum or dnf to install python3-spyking-circus on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install python3-spyking-circus.
Install python3-spyking-circus on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install python3-spyking-circus using dnf by running the following command:
sudo dnf -y install python3-spyking-circus
Install python3-spyking-circus on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install python3-spyking-circus using yum by running the following command:
sudo yum -y install python3-spyking-circus
How To Uninstall python3-spyking-circus on Fedora 36
To uninstall only the python3-spyking-circus package we can use the following command:
sudo dnf remove python3-spyking-circus
python3-spyking-circus Package Contents on Fedora 36
/usr/bin/circus-artefacts
/usr/bin/circus-folders
/usr/bin/circus-gui-matlab
/usr/bin/circus-gui-python
/usr/bin/circus-multi
/usr/bin/spyking-circus
/usr/bin/spyking-circus-launcher
/usr/bin/spyking-circus-subtask
/usr/lib/python3.10/site-packages/circus
/usr/lib/python3.10/site-packages/circus/__init__.py
/usr/lib/python3.10/site-packages/circus/__pycache__
/usr/lib/python3.10/site-packages/circus/__pycache__/__init__.cpython-310.opt-1.pyc
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/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/circus_folders.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/circus_multi.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/circus_multi.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/launch.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/launch.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/launch_gui.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/launch_gui.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/matlab_gui.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/matlab_gui.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/python_gui.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/python_gui.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/subtask.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/scripts/__pycache__/subtask.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/scripts/circus_artefacts.py
/usr/lib/python3.10/site-packages/circus/scripts/circus_folders.py
/usr/lib/python3.10/site-packages/circus/scripts/circus_multi.py
/usr/lib/python3.10/site-packages/circus/scripts/launch.py
/usr/lib/python3.10/site-packages/circus/scripts/launch_gui.py
/usr/lib/python3.10/site-packages/circus/scripts/matlab_gui.py
/usr/lib/python3.10/site-packages/circus/scripts/python_gui.py
/usr/lib/python3.10/site-packages/circus/scripts/subtask.py
/usr/lib/python3.10/site-packages/circus/shared
/usr/lib/python3.10/site-packages/circus/shared/__init__.py
/usr/lib/python3.10/site-packages/circus/shared/__pycache__
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/algorithms.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/algorithms.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/files.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/files.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/gui.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/gui.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/messages.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/messages.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/mpi.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/mpi.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/mplcanvas.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/mplcanvas.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/parser.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/parser.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/plot.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/plot.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/probes.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/probes.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/utils.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/shared/__pycache__/utils.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/shared/algorithms.py
/usr/lib/python3.10/site-packages/circus/shared/files.py
/usr/lib/python3.10/site-packages/circus/shared/gui.py
/usr/lib/python3.10/site-packages/circus/shared/messages.py
/usr/lib/python3.10/site-packages/circus/shared/mpi.py
/usr/lib/python3.10/site-packages/circus/shared/mplcanvas.py
/usr/lib/python3.10/site-packages/circus/shared/parser.py
/usr/lib/python3.10/site-packages/circus/shared/plot.py
/usr/lib/python3.10/site-packages/circus/shared/probes.py
/usr/lib/python3.10/site-packages/circus/shared/utils.py
/usr/lib/python3.10/site-packages/circus/thresholding.py
/usr/lib/python3.10/site-packages/circus/validating
/usr/lib/python3.10/site-packages/circus/validating/__init__.py
/usr/lib/python3.10/site-packages/circus/validating/__pycache__
/usr/lib/python3.10/site-packages/circus/validating/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/validating/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/validating/__pycache__/base.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/validating/__pycache__/base.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/validating/__pycache__/utils.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/circus/validating/__pycache__/utils.cpython-310.pyc
/usr/lib/python3.10/site-packages/circus/validating/base.py
/usr/lib/python3.10/site-packages/circus/validating/utils.py
/usr/lib/python3.10/site-packages/circus/whitening.py
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info/AUTHORS
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info/INSTALLER
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info/LICENSE
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info/METADATA
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info/WHEEL
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info/entry_points.txt
/usr/lib/python3.10/site-packages/spyking_circus-1.1.0.dist-info/top_level.txt
/usr/share/doc/python3-spyking-circus
/usr/share/doc/python3-spyking-circus/README.rst
/usr/share/spyking-circus
/usr/share/spyking-circus/config.params
/usr/share/spyking-circus/probes
/usr/share/spyking-circus/probes/ASSY-01-P.prb
/usr/share/spyking-circus/probes/ASSY-37-P.prb
/usr/share/spyking-circus/probes/ASSY-77-P.prb
/usr/share/spyking-circus/probes/adrien.prb
/usr/share/spyking-circus/probes/dan.prb
/usr/share/spyking-circus/probes/emilie.prb
/usr/share/spyking-circus/probes/imec.prb
/usr/share/spyking-circus/probes/kampff_128.prb
/usr/share/spyking-circus/probes/kampff_32.prb
/usr/share/spyking-circus/probes/mea_32.prb
/usr/share/spyking-circus/probes/mea_4225.prb
/usr/share/spyking-circus/probes/mea_64.prb
/usr/share/spyking-circus/probes/small_mea_252.prb
/usr/share/spyking-circus/probes/small_mea_256.prb
/usr/share/spyking-circus/probes/wide_mea_252.prb
/usr/share/spyking-circus/probes/wide_mea_256.prb
References
Summary
In this tutorial we learn how to install python3-spyking-circus on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
