How To Install python-probeinterface-doc on Fedora 36
Introduction
In this tutorial we learn how to install python-probeinterface-doc on Fedora 36.
What is python-probeinterface-doc
A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments. Goals Make a lightweight package to handle • probe contact geometry (both 2D and 3D layouts) • probe shape (contour of the probe, shape of channel contact, …) • probe wiring to device (the physical layout often doesn’t match the channel ordering) • combining several probes into a device with global geometry + global wiring • exporting probe geometry data into JSON files • loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech…) Started here Bonus • optional plotting (based on matplotlib) • load/save geometry using common formats (PRB, CSV, NWB, …) • handle SI length units correctly um/mm/… Target users/project • spikeinterface team location • neo team • spikeforest team • phy team • spyking-circus team • kilosort team • tridesclous team • open ephys team
We can use yum or dnf to install python-probeinterface-doc on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install python-probeinterface-doc.
Install python-probeinterface-doc on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install python-probeinterface-doc using dnf by running the following command:
sudo dnf -y install python-probeinterface-doc
Install python-probeinterface-doc on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install python-probeinterface-doc using yum by running the following command:
sudo yum -y install python-probeinterface-doc
How To Uninstall python-probeinterface-doc on Fedora 36
To uninstall only the python-probeinterface-doc package we can use the following command:
sudo dnf remove python-probeinterface-doc
python-probeinterface-doc Package Contents on Fedora 36
/usr/share/doc/python-probeinterface-doc
/usr/share/doc/python-probeinterface-doc/examples
/usr/share/doc/python-probeinterface-doc/examples/README.rst
/usr/share/doc/python-probeinterface-doc/examples/ex_01_generate_probe_from_sratch.py
/usr/share/doc/python-probeinterface-doc/examples/ex_02_probe_2d_probe_3d.py
/usr/share/doc/python-probeinterface-doc/examples/ex_03_generate_probe_group.py
/usr/share/doc/python-probeinterface-doc/examples/ex_04_multi_shank_probe.py
/usr/share/doc/python-probeinterface-doc/examples/ex_05_device_channel_indices.py
/usr/share/doc/python-probeinterface-doc/examples/ex_06_import_export_to_file.py
/usr/share/doc/python-probeinterface-doc/examples/ex_07_probe_generator.py
/usr/share/doc/python-probeinterface-doc/examples/ex_08_more_plotting_examples.py
/usr/share/doc/python-probeinterface-doc/examples/ex_09_more_complicated_probe.py
/usr/share/doc/python-probeinterface-doc/examples/ex_10_get_probe_from_library.py
/usr/share/doc/python-probeinterface-doc/examples/ex_11_automatic_wiring.py
/usr/share/doc/python-probeinterface-doc/examples/ex_12_plot_values.py
/usr/share/doc/python-probeinterface-doc/examples/my_two_probe_setup.json
/usr/share/doc/python-probeinterface-doc/examples/two_tetrodes.prb
/usr/share/doc/python-probeinterface-doc/probeinterface.pdf
/usr/share/licenses/python-probeinterface-doc
/usr/share/licenses/python-probeinterface-doc/LICENSE
References
Summary
In this tutorial we learn how to install python-probeinterface-doc on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
