How To Install imagej on Fedora 36

In this tutorial we learn how to install imagej in Fedora 36. imagej is Image Processing and Analysis in Java

Introduction

In this tutorial we learn how to install imagej on Fedora 36.

What is `imagej`

ImageJ is a public domain Java image processing program. It can display, edit, analyze a wide variety of image data, including image sequences. Imagej can be used for quantitative analysis of engineering and scientific image data.

We can use yum or dnf to install imagej on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install imagej.

Install imagej on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install imagej using dnf by running the following command:

sudo dnf -y install imagej

Install imagej on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install imagej using yum by running the following command:

sudo yum -y install imagej

How To Uninstall imagej on Fedora 36

To uninstall only the imagej package we can use the following command:

sudo dnf remove imagej

imagej Package Contents on Fedora 36

/usr/bin/imagej
/usr/share/applications/imagej.desktop
/usr/share/doc/imagej
/usr/share/doc/imagej/aREADME.txt
/usr/share/doc/imagej/applet.html
/usr/share/doc/imagej/release-notes.html
/usr/share/imagej
/usr/share/imagej/IJ_Props.txt
/usr/share/imagej/about.jpg
/usr/share/imagej/luts
/usr/share/imagej/macros
/usr/share/imagej/macros/3Dflight.txt
/usr/share/imagej/macros/AA_ReadMe.txt
/usr/share/imagej/macros/About Startup Macros
/usr/share/imagej/macros/ApplyDicomRescaleSlope.txt
/usr/share/imagej/macros/ApplyFunctionToImage.txt
/usr/share/imagej/macros/ArgumentPassingDemo.txt
/usr/share/imagej/macros/Arrays.txt
/usr/share/imagej/macros/Artillery.txt
/usr/share/imagej/macros/AzimuthalProfile.txt
/usr/share/imagej/macros/BackgroundCorrectedDensity.txt
/usr/share/imagej/macros/BatchConvert.txt
/usr/share/imagej/macros/BatchConvertToBinary.txt
/usr/share/imagej/macros/BatchConvertToJPEG.txt
/usr/share/imagej/macros/BatchMeasure.txt
/usr/share/imagej/macros/BatchModeCalculator.txt
/usr/share/imagej/macros/BatchModeCompositeSelection.txt
/usr/share/imagej/macros/BatchModeTest.txt
/usr/share/imagej/macros/BatchProcessFolders.txt
/usr/share/imagej/macros/BatchRGBMeasure.txt
/usr/share/imagej/macros/BatchSetScale.txt
/usr/share/imagej/macros/Batch_RGB_Merge.txt
/usr/share/imagej/macros/BouncingBar.txt
/usr/share/imagej/macros/BuiltinFunctions.txt
/usr/share/imagej/macros/BullsEye.txt
/usr/share/imagej/macros/CalculateMean.txt
/usr/share/imagej/macros/Calculate_Black_to_White_Ratio.txt
/usr/share/imagej/macros/Calculations.txt
/usr/share/imagej/macros/ChangeColors.txt
/usr/share/imagej/macros/CircularParticles.txt
/usr/share/imagej/macros/CloseAllWindows.txt
/usr/share/imagej/macros/CommandLine.txt
/usr/share/imagej/macros/CompositeSelections.txt
/usr/share/imagej/macros/ConvertDicomDictionary.txt
/usr/share/imagej/macros/ConvertMaskToCompositeROI.txt
/usr/share/imagej/macros/ConvertStackToBinary.txt
/usr/share/imagej/macros/ConvexHull.txt
/usr/share/imagej/macros/ConvexitySolidarity.txt
/usr/share/imagej/macros/CreateImageFromFunction.txt
/usr/share/imagej/macros/CustomHistogram.txt
/usr/share/imagej/macros/Custom_Profile_Plot.txt
/usr/share/imagej/macros/DXM_jpg_acquisition_Mode.txt
/usr/share/imagej/macros/DeconvolutionDemo.txt
/usr/share/imagej/macros/DialogDemo.txt
/usr/share/imagej/macros/DisplayRangeMacros.txt
/usr/share/imagej/macros/DisplayTiffInfo.txt
/usr/share/imagej/macros/Display_Pixel_Values.txt
/usr/share/imagej/macros/DoWandDemo.txt
/usr/share/imagej/macros/DottedLines.txt
/usr/share/imagej/macros/DrawGradientLine.txt
/usr/share/imagej/macros/DrawRandomDots.txt
/usr/share/imagej/macros/DrawSliceLabels.txt
/usr/share/imagej/macros/EDM_16bits.txt
/usr/share/imagej/macros/EXIF_Batch_Reader.txt
/usr/share/imagej/macros/EllipseCalibration.txt
/usr/share/imagej/macros/ErodeToSinglePixel.txt
/usr/share/imagej/macros/EvalDemo.txt
/usr/share/imagej/macros/ExamplePlots.txt
/usr/share/imagej/macros/ExifDateAndTime.txt
/usr/share/imagej/macros/ExpandOrShrinkSelection.txt
/usr/share/imagej/macros/ExtractRGBChannels.txt
/usr/share/imagej/macros/FFTCustomFilterDemo.txt
/usr/share/imagej/macros/FFTRemoveStreaks.txt
/usr/share/imagej/macros/Factorials.txt
/usr/share/imagej/macros/FeretsDiameter.txt
/usr/share/imagej/macros/FileDemo.txt
/usr/share/imagej/macros/FileSequences.txt
/usr/share/imagej/macros/Find.txt
/usr/share/imagej/macros/FindMaxPixelLocation.txt
/usr/share/imagej/macros/FindSelectionLimits.txt
/usr/share/imagej/macros/FindSelectionPeak.txt
/usr/share/imagej/macros/FindTopPixel.txt
/usr/share/imagej/macros/FixLineEndings.txt
/usr/share/imagej/macros/FixNIHImageTiffs.txt
/usr/share/imagej/macros/Fixed16BitTo8BitConversion.txt
/usr/share/imagej/macros/FractalEDM.txt
/usr/share/imagej/macros/FullRange16BitInvert.txt
/usr/share/imagej/macros/FullTelomerecounter.txt
/usr/share/imagej/macros/Gamma.txt
/usr/share/imagej/macros/GaussianConvolution.txt
/usr/share/imagej/macros/GenerateColorMap.txt
/usr/share/imagej/macros/GetCursorLocDemo.txt
/usr/share/imagej/macros/GetDateAndTime.txt
/usr/share/imagej/macros/GetDirectoryDemo.txt
/usr/share/imagej/macros/GetProfileExample.txt
/usr/share/imagej/macros/HSB_Histogram.txt
/usr/share/imagej/macros/HalfCircleSelections.txt
/usr/share/imagej/macros/HistogramLister.txt
/usr/share/imagej/macros/HistogramOfResultsValues.txt
/usr/share/imagej/macros/HistogramPlotter.txt
/usr/share/imagej/macros/HtmlDialogDemo.txt
/usr/share/imagej/macros/ImageCalculatorDemo.txt
/usr/share/imagej/macros/ImageCreationTest.txt
/usr/share/imagej/macros/ImageRotator.txt
/usr/share/imagej/macros/Import_Results_Table.txt
/usr/share/imagej/macros/Init.txt
/usr/share/imagej/macros/InvertImage.txt
/usr/share/imagej/macros/KeyboardShortcuts.txt
/usr/share/imagej/macros/LSM_Batch_With_Colors.txt
/usr/share/imagej/macros/LabelParticlesWithArea.txt
/usr/share/imagej/macros/LineAngleTool.txt
/usr/share/imagej/macros/LineStatistics.txt
/usr/share/imagej/macros/ListDicomTags.txt
/usr/share/imagej/macros/ListFilesRecursively.txt
/usr/share/imagej/macros/ListSelectionCoordinates.txt
/usr/share/imagej/macros/LookupTables.txt
/usr/share/imagej/macros/LoopStack.txt
/usr/share/imagej/macros/MacroSet.txt
/usr/share/imagej/macros/MakeMontage.txt
/usr/share/imagej/macros/MakeSelectionDemo.txt
/usr/share/imagej/macros/Mandelbrot.txt
/usr/share/imagej/macros/MaskToSelectionMacros.txt
/usr/share/imagej/macros/Max_Value_Segmentation.txt
/usr/share/imagej/macros/Measure3Lengths.txt
/usr/share/imagej/macros/MeasureAndLabelXYZ.txt
/usr/share/imagej/macros/MeasureAndSetLabel.txt
/usr/share/imagej/macros/MeasureAreaFraction.txt
/usr/share/imagej/macros/MeasureEdgePixels.txt
/usr/share/imagej/macros/MeasureOutside.txt
/usr/share/imagej/macros/MeasurePointSpacing.txt
/usr/share/imagej/macros/MeasureRGB.txt
/usr/share/imagej/macros/MeasureRedirected.txt
/usr/share/imagej/macros/MeasureStack.txt
/usr/share/imagej/macros/Measure_And_Label.txt
/usr/share/imagej/macros/Measure_Angle_And_Length.txt
/usr/share/imagej/macros/MotionBlurRemoval.txt
/usr/share/imagej/macros/MoveSelection.txt
/usr/share/imagej/macros/MultipleColourAnalysis.txt
/usr/share/imagej/macros/MultipleColourBackgrounds.txt
/usr/share/imagej/macros/OpenFileDemo.txt
/usr/share/imagej/macros/OpenImagesFromList.txt
/usr/share/imagej/macros/OpenMacIPLab.txt
/usr/share/imagej/macros/OpenSeriesUsingFilter.txt
/usr/share/imagej/macros/ParseFloatIntExamples.txt
/usr/share/imagej/macros/ParticleCircularityHistogram.txt
/usr/share/imagej/macros/ParticleClusterAnalysis.txt
/usr/share/imagej/macros/ParticleLabelingExample.txt
/usr/share/imagej/macros/ParticleOutlines.txt
/usr/share/imagej/macros/ParticleRotator.txt
/usr/share/imagej/macros/PasteControlDemo.txt
/usr/share/imagej/macros/PlotColumnPixelCounts.txt
/usr/share/imagej/macros/PlotProfileWithSD.txt
/usr/share/imagej/macros/PlotStack.txt
/usr/share/imagej/macros/PointsToStack.txt
/usr/share/imagej/macros/Polygon.txt
/usr/share/imagej/macros/PolygonArea.txt
/usr/share/imagej/macros/Pong.txt
/usr/share/imagej/macros/RGB_Histogram.txt
/usr/share/imagej/macros/ROI_Manager_Stack_Demo.txt
/usr/share/imagej/macros/RadialIntegratedIntensity.txt
/usr/share/imagej/macros/RandomOvals.txt
/usr/share/imagej/macros/RandomSampleAndMeasure.txt
/usr/share/imagej/macros/RatioOfDifferenceAndSum.txt
/usr/share/imagej/macros/RecordProfile.txt
/usr/share/imagej/macros/RedirectedParticleAnalysis.txt
/usr/share/imagej/macros/RegressionTests.txt
/usr/share/imagej/macros/ReplaceRedWithMagenta.txt
/usr/share/imagej/macros/ResizeImagesAndStack.txt
/usr/share/imagej/macros/ResultsSummary.txt
/usr/share/imagej/macros/ReturnStatements.txt
/usr/share/imagej/macros/RoiManagerAddParticles.txt
/usr/share/imagej/macros/RoiManagerMacros.txt
/usr/share/imagej/macros/RoiManagerSpeedTest.txt
/usr/share/imagej/macros/RotateSelection.txt
/usr/share/imagej/macros/Rotate_Image.txt
/usr/share/imagej/macros/RotatingPolygon.txt
/usr/share/imagej/macros/ScaleSelection.txt
/usr/share/imagej/macros/Search_Macros.txt
/usr/share/imagej/macros/SelectionCoordinates.txt
/usr/share/imagej/macros/Shift_RGB_Channel.txt
/usr/share/imagej/macros/Shortcuts.txt
/usr/share/imagej/macros/ShowImageInfo.txt
/usr/share/imagej/macros/ShowPath.txt
/usr/share/imagej/macros/ShowRawStatistics.txt
/usr/share/imagej/macros/ShowScale.txt
/usr/share/imagej/macros/ShowStatistics.txt
/usr/share/imagej/macros/Show_Selection_As_Text.txt
/usr/share/imagej/macros/SineCosineTable.txt
/usr/share/imagej/macros/Slice-to-Slice Difference.txt
/usr/share/imagej/macros/SortDemo.txt
/usr/share/imagej/macros/StackHistogramLister.txt
/usr/share/imagej/macros/StackProfilePlot.txt
/usr/share/imagej/macros/Stacks.txt
/usr/share/imagej/macros/StartupMacros.txt
/usr/share/imagej/macros/Statements.txt
/usr/share/imagej/macros/StringFunctions.txt
/usr/share/imagej/macros/SubractMeasuredBackground.txt
/usr/share/imagej/macros/SubtractProfile.txt
/usr/share/imagej/macros/SumAreas.txt
/usr/share/imagej/macros/Test_Wavelets.txt
/usr/share/imagej/macros/TextDemo.txt
/usr/share/imagej/macros/TiffCommentsEditor.txt
/usr/share/imagej/macros/TimeLapseCapture.txt
/usr/share/imagej/macros/TimingTest.txt
/usr/share/imagej/macros/ToolShortcuts.txt
/usr/share/imagej/macros/Translate.txt
/usr/share/imagej/macros/Unicode.txt
/usr/share/imagej/macros/UserFunctions.txt
/usr/share/imagej/macros/VolumeFractionOfBone.txt
/usr/share/imagej/macros/data
/usr/share/imagej/macros/data/PlotStackData.txt
/usr/share/imagej/macros/getRGBPixelCount.txt
/usr/share/imagej/macros/telecran.txt
/usr/share/imagej/macros/tools
/usr/share/imagej/macros/tools/3D-Distance-Tool.txt
/usr/share/imagej/macros/tools/3FluoLablelingExploringTools.txt
/usr/share/imagej/macros/tools/AboutTool.txt
/usr/share/imagej/macros/tools/ArrowMakerTool.txt
/usr/share/imagej/macros/tools/ArrowTool.txt
/usr/share/imagej/macros/tools/BigCursorTool.txt
/usr/share/imagej/macros/tools/ButtonBar.txt
/usr/share/imagej/macros/tools/ChangeColorTool.txt
/usr/share/imagej/macros/tools/CircleTool.txt
/usr/share/imagej/macros/tools/CircularQuadrantMeasureTool.txt
/usr/share/imagej/macros/tools/CircularSelectionTool.txt
/usr/share/imagej/macros/tools/ClickToTrackTool.txt
/usr/share/imagej/macros/tools/ColorPickerTool.txt
/usr/share/imagej/macros/tools/ConcentricRingsTool.txt
/usr/share/imagej/macros/tools/DrawingTools.txt
/usr/share/imagej/macros/tools/ExampleTool.txt
/usr/share/imagej/macros/tools/FloodFillTool.txt
/usr/share/imagej/macros/tools/GetCursorLocDemoTool.txt
/usr/share/imagej/macros/tools/LabelLineTool.txt
/usr/share/imagej/macros/tools/LineAngleTool.txt
/usr/share/imagej/macros/tools/LineTool.txt
/usr/share/imagej/macros/tools/MagnifyingGlassTool.txt
/usr/share/imagej/macros/tools/MeasurePieSegmentsTool.txt
/usr/share/imagej/macros/tools/MeasurerAndLabelTool.txt
/usr/share/imagej/macros/tools/MirrorSelectionTool.txt
/usr/share/imagej/macros/tools/MultiCursorTool.txt
/usr/share/imagej/macros/tools/PaintbrushTool.txt
/usr/share/imagej/macros/tools/PencilTool.txt
/usr/share/imagej/macros/tools/PixelPickerTool.txt
/usr/share/imagej/macros/tools/SpotMeasurementTool.txt
/usr/share/imagej/macros/tools/SprayCanTool.txt
/usr/share/imagej/macros/tools/Tools.txt
/usr/share/imagej/macros/tools/WandAutoMeasureTool.txt
/usr/share/imagej/macros/tools/ZProfileTool.txt
/usr/share/imagej/plugins
/usr/share/java/imagej.jar
/usr/share/pixmaps/imagej.png

References

imagej website

Summary

In this tutorial we learn how to install imagej on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).